View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_5 (Length: 790)

Name: NF11780_low_5
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_5
NF11780_low_5
[»] chr4 (38 HSPs)
chr4 (478-775)||(12589644-12589943)
chr4 (478-775)||(46764560-46764859)
chr4 (478-775)||(25655081-25655379)
chr4 (488-665)||(11680763-11680941)
chr4 (488-665)||(11689042-11689220)
chr4 (120-237)||(46765099-46765216)
chr4 (120-237)||(12589287-12589404)
chr4 (120-239)||(11681203-11681322)
chr4 (120-239)||(11689482-11689601)
chr4 (310-418)||(11681024-11681132)
chr4 (310-418)||(11689303-11689411)
chr4 (125-239)||(25654729-25654843)
chr4 (310-418)||(46764919-46765026)
chr4 (310-418)||(12589477-12589584)
chr4 (321-418)||(25654925-25655021)
chr4 (700-775)||(11680584-11680659)
chr4 (700-775)||(11688863-11688938)
chr4 (125-239)||(31634748-31634862)
chr4 (121-168)||(25370507-25370554)
chr4 (120-239)||(52757813-52757932)
chr4 (700-775)||(52758423-52758498)
chr4 (127-191)||(11680283-11680348)
chr4 (127-191)||(11688562-11688627)
chr4 (127-191)||(25655615-25655680)
chr4 (325-418)||(52758007-52758101)
chr4 (119-167)||(21165446-21165494)
chr4 (127-167)||(46764259-46764299)
chr4 (158-226)||(53290178-53290246)
chr4 (319-362)||(3619636-3619679)
chr4 (120-167)||(26611284-26611331)
chr4 (120-187)||(47377579-47377646)
chr4 (319-362)||(53290035-53290078)
chr4 (121-167)||(3847887-3847933)
chr4 (117-167)||(36865718-36865768)
chr4 (120-197)||(1013977-1014054)
chr4 (127-191)||(12590179-12590244)
chr4 (145-226)||(23383335-23383416)
chr4 (120-197)||(48091104-48091181)
[»] chr6 (18 HSPs)
chr6 (478-775)||(10607760-10608059)
chr6 (478-775)||(931232-931531)
chr6 (125-239)||(10607406-10607520)
chr6 (310-418)||(931591-931699)
chr6 (120-239)||(931770-931891)
chr6 (310-418)||(10607591-10607700)
chr6 (120-168)||(29997645-29997693)
chr6 (118-168)||(4826396-4826446)
chr6 (127-166)||(930930-930969)
chr6 (120-187)||(24125972-24126039)
chr6 (127-191)||(1034728-1034793)
chr6 (120-168)||(29998175-29998223)
chr6 (120-167)||(3543064-3543111)
chr6 (120-187)||(7159322-7159389)
chr6 (125-167)||(3542819-3542861)
chr6 (127-191)||(10608296-10608361)
chr6 (118-167)||(24126719-24126768)
chr6 (118-167)||(33480629-33480678)
[»] chr1 (9 HSPs)
chr1 (1-119)||(33741340-33741456)
chr1 (120-239)||(45064686-45064805)
chr1 (118-239)||(49610704-49610825)
chr1 (700-755)||(49611273-49611328)
chr1 (120-168)||(8561736-8561784)
chr1 (700-755)||(43879063-43879118)
chr1 (117-167)||(43737726-43737776)
chr1 (150-191)||(4640558-4640599)
chr1 (125-166)||(49611562-49611603)
[»] chr5 (14 HSPs)
chr5 (540-652)||(4371130-4371243)
chr5 (118-239)||(16970962-16971083)
chr5 (316-392)||(16970806-16970882)
chr5 (120-239)||(8226642-8226761)
chr5 (120-168)||(2319266-2319314)
chr5 (120-168)||(26268344-26268392)
chr5 (120-168)||(26269021-26269069)
chr5 (540-593)||(4363327-4363380)
chr5 (120-168)||(2319967-2320015)
chr5 (120-167)||(33284024-33284071)
chr5 (125-167)||(33283170-33283212)
chr5 (122-168)||(39166591-39166637)
chr5 (114-183)||(7625467-7625536)
chr5 (118-167)||(39950402-39950451)
[»] chr2 (6 HSPs)
chr2 (120-239)||(16427216-16427335)
chr2 (120-168)||(41984727-41984775)
chr2 (120-191)||(40992222-40992294)
chr2 (120-168)||(41043328-41043376)
chr2 (120-167)||(14573261-14573308)
chr2 (118-167)||(16426551-16426600)
[»] chr7 (21 HSPs)
chr7 (126-239)||(29315240-29315353)
chr7 (316-392)||(41224315-41224391)
chr7 (700-755)||(29314869-29314924)
chr7 (125-212)||(41224114-41224201)
chr7 (117-168)||(48259243-48259294)
chr7 (120-168)||(45887980-45888028)
chr7 (120-168)||(46757377-46757425)
chr7 (700-755)||(41224548-41224603)
chr7 (316-392)||(29315083-29315156)
chr7 (114-168)||(47331953-47332007)
chr7 (127-191)||(44896053-44896118)
chr7 (121-166)||(48259820-48259865)
chr7 (119-167)||(24322352-24322400)
chr7 (120-168)||(45887279-45887327)
chr7 (120-190)||(29006347-29006418)
chr7 (120-190)||(29007176-29007247)
chr7 (120-168)||(4984809-4984856)
chr7 (120-168)||(4985394-4985442)
chr7 (120-168)||(4989492-4989540)
chr7 (142-230)||(30915756-30915844)
chr7 (127-167)||(44909360-44909400)
[»] chr8 (14 HSPs)
chr8 (127-239)||(30272885-30272997)
chr8 (127-239)||(36936626-36936738)
chr8 (127-239)||(36936347-36936459)
chr8 (701-755)||(41092460-41092514)
chr8 (127-191)||(41348151-41348216)
chr8 (120-191)||(43924490-43924561)
chr8 (158-239)||(41092732-41092813)
chr8 (120-167)||(25876521-25876568)
chr8 (319-362)||(30272764-30272807)
chr8 (120-167)||(34992265-34992312)
chr8 (319-362)||(36936226-36936269)
chr8 (319-362)||(36936505-36936548)
chr8 (337-392)||(41092577-41092632)
chr8 (119-191)||(41092171-41092244)
[»] scaffold0180 (2 HSPs)
scaffold0180 (700-755)||(22763-22818)
scaffold0180 (149-239)||(22171-22261)
[»] chr3 (12 HSPs)
chr3 (700-755)||(46739938-46739993)
chr3 (700-755)||(46721331-46721386)
chr3 (138-221)||(46740512-46740595)
chr3 (118-239)||(46721887-46722008)
chr3 (119-239)||(38742103-38742223)
chr3 (700-773)||(38741525-38741598)
chr3 (319-418)||(38741928-38742028)
chr3 (119-191)||(38336943-38337015)
chr3 (120-191)||(38337454-38337525)
chr3 (116-196)||(44406931-44407011)
chr3 (118-167)||(45242988-45243037)
chr3 (150-235)||(50305401-50305486)
[»] scaffold0155 (1 HSPs)
scaffold0155 (118-167)||(17337-17386)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 478 - 775
Target Start/End: Original strand, 12589644 - 12589943
Alignment:
Q  478 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589644 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccg 12589743  T
Q  578 cagctgatgcttccaaagatctcata--ctgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaa 675  Q
    || |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589744 caactgatgcttccaaagatctcatatactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaa 12589843  T
Q  676 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589844 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 12589943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 478 - 775
Target Start/End: Complemental strand, 46764859 - 46764560
Alignment:
Q  478 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46764859 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccg 46764760  T
Q  578 cagctgatgcttccaaagatctcata--ctgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaa 675  Q
    || |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46764759 caactgatgcttccaaagatctcatatactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaa 46764660  T
Q  676 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  46764659 aaagattaacagtcatatgttatggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaaataaaagataattct 46764560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 478 - 775
Target Start/End: Original strand, 25655081 - 25655379
Alignment:
Q  478 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccg 577  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25655081 caccatgtttgattatactactggatttgttcatttgtattccatgttcca-gttccttcatgggtccacttgttccccactctttcttcccaattgccg 25655179  T
Q  578 cagctgatgcttccaaagatctcata--ctgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaa 675  Q
    || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  25655180 caactgatgcttccaaagatctcatatactgtttgaaaaatgagttattttggttaattaatagctagctattttgtattaagatgaaaataatgatgaa 25655279  T
Q  676 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25655280 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaaataaaagatgattct 25655379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 488 - 665
Target Start/End: Complemental strand, 11680941 - 11680763
Alignment:
Q  488 gattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgc 587  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11680941 gattatactatttgatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgc 11680842  T
Q  588 ttccaaagatctc--atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaa 665  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11680841 ttccaaagatctcatatactg-ttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaa 11680763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 488 - 665
Target Start/End: Complemental strand, 11689220 - 11689042
Alignment:
Q  488 gattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgc 587  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11689220 gattatactatttgatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgc 11689121  T
Q  588 ttccaaagatctc--atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaa 665  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11689120 ttccaaagatctcatatactg-ttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaa 11689042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 46765216 - 46765099
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46765216 ggtggcatttaatttgggaaagactagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatacagtcatatcatactccctc 46765117  T
Q  220 aatactatattgttctcc 237  Q
    ||||||||||||||||||    
T  46765116 aatactatattgttctcc 46765099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 12589287 - 12589404
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  12589287 ggtgacatttaatttgggaaagattagttttttcccactatgggaaagcaagtttcaaccattagattaaatgaagaatacattcatatcatactccctc 12589386  T
Q  220 aatactatattgttctcc 237  Q
    ||||||||||||||||||    
T  12589387 aatactatattgttctcc 12589404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 11681322 - 11681203
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  11681322 ggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagattaaatgaagagtacagtcatatcatactccctc 11681223  T
Q  220 aatactatattgttctccct 239  Q
    ||||||||||||||||||||    
T  11681222 aatactatattgttctccct 11681203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 11689601 - 11689482
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  11689601 ggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagattaaatgaagagtacagtcatatcatactccctc 11689502  T
Q  220 aatactatattgttctccct 239  Q
    ||||||||||||||||||||    
T  11689501 aatactatattgttctccct 11689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 11681132 - 11681024
Alignment:
Q  310 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 409  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  11681132 tccaacagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatctaaga 11681033  T
Q  410 ttgatatgg 418  Q
    |||||||||    
T  11681032 ttgatatgg 11681024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 11689411 - 11689303
Alignment:
Q  310 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 409  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  11689411 tccaacagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatctaaga 11689312  T
Q  410 ttgatatgg 418  Q
    |||||||||    
T  11689311 ttgatatgg 11689303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 25654729 - 25654843
Alignment:
Q  125 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatac 224  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  25654729 catttaatttgggaaagactagttttttcccaccatggaaaaacaagtttcaaccattaaattaaatgaagaatacagtcatatcatactccctcaatac 25654828  T
Q  225 tatattgttctccct 239  Q
    |||||||||||||||    
T  25654829 tatattgttctccct 25654843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 46765026 - 46764919
Alignment:
Q  310 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 409  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46765026 tccaacagtaccattataaccaccac-accatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatcaaaga 46764928  T
Q  410 ttgatatgg 418  Q
    |||||||||    
T  46764927 ttgatatgg 46764919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 12589477 - 12589584
Alignment:
Q  310 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 409  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  12589477 tccaacagtaccattataaccaccac-accatcatgtttaacacatagatctccatcactctttctacattttgtgataatttgattatttgatcaaaga 12589575  T
Q  410 ttgatatgg 418  Q
    |||||||||    
T  12589576 ttgatatgg 12589584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 321 - 418
Target Start/End: Original strand, 25654925 - 25655021
Alignment:
Q  321 cattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaagattgatatgg 418  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25654925 cattataaccaccac-accatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatcaaagattgatatgg 25655021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 700 - 775
Target Start/End: Complemental strand, 11680659 - 11680584
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11680659 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagattattct 11680584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 700 - 775
Target Start/End: Complemental strand, 11688938 - 11688863
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11688938 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagattattct 11688863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 31634862 - 31634748
Alignment:
Q  125 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatac 224  Q
    ||||||||||| |||||| ||||||||| ||| ||||| |||| |||||| |||||||||||  ||||||||||| | || |||||||||||||||| ||    
T  31634862 catttaatttgagaaagactagtttttttccatcatggaaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctcaacac 31634763  T
Q  225 tatattgttctccct 239  Q
    |  ||| ||||||||    
T  31634762 tcaatttttctccct 31634748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 25370507 - 25370554
Alignment:
Q  121 gtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||    
T  25370507 gtggcatttaatttgggaaaggctagttttttcccaccatgggaaagc 25370554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 52757813 - 52757932
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    |||| ||||||||||||||||||  | ||||||||| |||| |||||| |||||| || | |||||||||||  |||| | | || |||||| |||||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttccctccataggaaagtaagttttaatctttagattaaatagagaacatactcttatcatgctccctc 52757912  T
Q  220 aatactatattgttctccct 239  Q
    |||| || ||| ||||||||    
T  52757913 aatattagatttttctccct 52757932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 700 - 775
Target Start/End: Original strand, 52758423 - 52758498
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    |||||||| | ||| ||||||| || |||||||||||||||||||||||||||||| | | | |||||||||||||    
T  52758423 gatagagagattagaaaaccaatagattatggattttgtgagtataaggatgaagaattaaacaaaagatgattct 52758498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 11680283 - 11680348
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    ||||||||||||||| |||||||||||||||||||||||||  || |||  |||||||||||||||    
T  11680283 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaat 11680348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 11688562 - 11688627
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    ||||||||||||||| |||||||||||||||||||||||||  || |||  |||||||||||||||    
T  11688562 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaat 11688627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 25655680 - 25655615
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    |||||||||||||||| ||||||||||||||||||||||||  || |||  |||||||||||||||    
T  25655680 tttaatttgggaaagactagttttttcccaccatgggaaagttagtttttgaccattagattaaat 25655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 52758007 - 52758101
Alignment:
Q  325 ataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgatt-attcgatcaaagattgatatgg 418  Q
    ||||||||||||| || |||||||||||  || |||||  ||||| | |||| |||||||||| |||||||| ||| ||||||| ||||||||||    
T  52758007 ataaccaccaccatcaccatgtttaacatctaaatctcgttcactttctctatattttgtgatgatttgattaatttgatcaaaaattgatatgg 52758101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 21165446 - 21165494
Alignment:
Q  119 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    ||||| |||||||||||||||||| ||||| |||||||||||| |||||    
T  21165446 tggtgccatttaatttgggaaagaatagttctttcccaccatgagaaag 21165494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 46764259 - 46764299
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  46764259 tttaatttggaaaagactagttttttcccaccatgggaaag 46764299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 53290246 - 53290178
Alignment:
Q  158 catgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 226  Q
    |||||||||| |||||| |||||||||||| ||||||||||| | |  ||||||||||| || ||||||    
T  53290246 catgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatactccttcgatacta 53290178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 3619679 - 3619636
Alignment:
Q  319 accattataaccaccaccaccatcatgtttaacacatagatctc 362  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  3619679 accatcataaccaccaccaccaccatgtttaacacctagatctc 3619636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 26611331 - 26611284
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaag 26611284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 47377646 - 47377579
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagatt 187  Q
    |||| |||||||||||||||||   |||| ||||||||||||||||||  | ||||| ||||||||||    
T  47377646 ggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatt 47377579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 53290078 - 53290035
Alignment:
Q  319 accattataaccaccaccaccatcatgtttaacacatagatctc 362  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  53290078 accatcataaccaccaccaccaccatgtttaacacctagatctc 53290035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 3847887 - 3847933
Alignment:
Q  121 gtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||||||||||||||||||   | |||||||||||||||||||||    
T  3847887 gtggcatttaatttgggaaaggagacttttttcccaccatgggaaag 3847933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 36865768 - 36865718
Alignment:
Q  117 gatggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    ||||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  36865768 gatggtgacatttaatttgggaaaggagagttctttcccaccatgggaaag 36865718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 1014054 - 1013977
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaa 197  Q
    |||| ||||||||||||| |||   |||| ||||||||||||||||||  || || |||||||||||| ||| |||||    
T  1014054 ggtgacatttaatttgggtaagtgaagttgtttcccaccatgggaaagttagattaaaccattagatttaatcaagaa 1013977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 12590244 - 12590179
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    |||||||||||||||  ||||||||| ||||||||||||||  || |||  |||||||||||||||    
T  12590244 tttaatttgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagattaaat 12590179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 23383335 - 23383416
Alignment:
Q  145 agttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 226  Q
    |||| ||||||||||||||||||  | ||| | ||||| ||| |||||||||| | | || ||||||||||| |||||||||    
T  23383335 agttgtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcatactccatcaatacta 23383416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 48091181 - 48091104
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaa 197  Q
    |||||||||| || |||||||| ||| | |||||||||||||||||||   | |||||  |||||||||| |||||||    
T  48091181 ggtggcatttcatatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtgaagaa 48091104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 277; Significance: 1e-154; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 478 - 775
Target Start/End: Original strand, 10607760 - 10608059
Alignment:
Q  478 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccg 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10607760 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatggatccacttgttccccactctttcttcccaattgccg 10607859  T
Q  578 cagctgatgcttccaaagatctcata--ctgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaa 675  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10607860 cagctgatgcttccaaagatctcatatactgtttgaaaaatgagttattttggttaattagtagctagatgttttgtattaagatgaaaataatgatgaa 10607959  T
Q  676 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10607960 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaggtaaaagatgattct 10608059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 478 - 775
Target Start/End: Complemental strand, 931531 - 931232
Alignment:
Q  478 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  931531 caccatgttcgattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccg 931432  T
Q  578 cagctgatgcttccaaagatctcata--ctgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaa 675  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  931431 cagctgatgcttccaaagatctcatatactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaa 931332  T
Q  676 aaagattaacagtcatatgttctggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattct 775  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  931331 aaagattaacagtcatatgttttggatagagaaactaggaaaccaaaaggttatgaattttgtgagtataaggatgaagactaagataaaagatgattct 931232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 10607406 - 10607520
Alignment:
Q  125 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatac 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  10607406 catttaatttgggaaagactagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaaaaatatagtcatatcatactccctcaatac 10607505  T
Q  225 tatattgttctccct 239  Q
    |||||||||||||||    
T  10607506 tatattgttctccct 10607520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 931699 - 931591
Alignment:
Q  310 tccaagagtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaaga 409  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  931699 tccaacagtaccattctaaccaccaccaccatcatgtttaacacatagatctccttcactctttctacattttgtgataatttgattatttgatcaaaga 931600  T
Q  410 ttgatatgg 418  Q
    |||||||||    
T  931599 ttgatatgg 931591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 931891 - 931770
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatg--aagaatagagtcatatcatactccc 217  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| |||||||||||||||||    
T  931891 ggtggcatttaatttagaaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaaaaaaatacagtcatatcatactccc 931792  T
Q  218 tcaatactatattgttctccct 239  Q
    ||||||||||| |||| |||||    
T  931791 tcaatactatactgttatccct 931770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 10607591 - 10607700
Alignment:
Q  310 tccaagagtaccattataaccaccaccaccatcatgttt-aacacatagatctccctcactctttctacattttgtgataatttgattattcgatcaaag 408  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  10607591 tccaagagtaccattataaccaccactaccatcatgttttaacacatagatctccctcaccctttctacattttgtgataattatattatttgatcaaag 10607690  T
Q  409 attgatatgg 418  Q
    ||||||||||    
T  10607691 attgatatgg 10607700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 29997645 - 29997693
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29997645 ggtggcatttaatttgggaaagattagtttttttccaccatgggaaagc 29997693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 4826396 - 4826446
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||||| ||||| |||||||||| ||||||||    
T  4826396 atggtggcatttaatttgggaaagactagttatttcccaccacgggaaagc 4826446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 930930 - 930969
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaa 166  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  930930 tttaatttgggaaagactagttttttcccaccatgggaaa 930969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 24125972 - 24126039
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagatt 187  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||  | ||||| ||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatt 24126039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 1034728 - 1034793
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    ||||||||||||||| ||||||||| |||||||| ||||||  || ||| ||||||||||||||||    
T  1034728 tttaatttgggaaaggttagtttttccccaccataggaaagttagtttttaaccattagattaaat 1034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 29998223 - 29998175
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||| |||| |||||||||| ||| |||||||||||    
T  29998223 ggtggcatttaatttggaaaaggttagtttttttccatcatgggaaagc 29998175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 3543111 - 3543064
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 3543064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 7159389 - 7159322
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagatt 187  Q
    |||| |||||||||||||||||   | |||||||||| |||||||||| || | ||||||||||||||    
T  7159389 ggtgccatttaatttgggaaagcaaacttttttcccatcatgggaaagtaaatctcaaccattagatt 7159322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 3542819 - 3542861
Alignment:
Q  125 catttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||||||||||||||   |||||||||||||||||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaag 3542861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 10608361 - 10608296
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    |||||||||||||||  | ||||||||||||||||||||||  || |||  |||||||||||||||    
T  10608361 tttaatttgggaaaggctggttttttcccaccatgggaaagttagtttttgaccattagattaaat 10608296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 24126768 - 24126719
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    ||||||||||||||||||||||||   |||| ||||||| ||||||||||    
T  24126768 atggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaag 24126719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 33480678 - 33480629
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  33480678 atggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 33480629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 33741456 - 33741340
Alignment:
Q  1 tgtttttggaaaatggtggcacaatttttggatcat-ttgcagtagagtattatgtcatctgtgatagtgaagatgtctgtgaaaacgaaaatgcttagg 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||||  |||||   |||||    
T  33741456 tgtttttggaaaatggtggcacaatttttggatcatgttgcagtcgagtattatgtcatccgtgatagtgaagatgtttgtgaaagtgaaaa---ttagg 33741360  T
Q  100 accgctttgccaatcatgat 119  Q
    |||||||| |||||||||||    
T  33741359 accgctttaccaatcatgat 33741340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 45064686 - 45064805
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||  ||| ||||||| | || ||||||||||||||    
T  45064686 ggtgccatttaatttgggaaagattagttttttcccatcatgggaaagtaagttttaaccattagatctaattaagaatatactcttatcatactccctc 45064785  T
Q  220 aatactatattgttctccct 239  Q
    || |||  ||| ||||||||    
T  45064786 aacactcaatttttctccct 45064805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 49610704 - 49610825
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccc 217  Q
    |||||| ||||| ||||||||||||  | ||||||||| ||||||||||| |||||| |||| |||||||||||| | || | | || |||||| |||||    
T  49610704 atggtgccattttatttgggaaagaagacttttttccctccatgggaaagtaagttttaacctttagattaaatggataacatactcttatcatgctccc 49610803  T
Q  218 tcaatactatattgttctccct 239  Q
    ||||||||| ||| ||||||||    
T  49610804 tcaatactagatttttctccct 49610825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 700 - 755
Target Start/End: Original strand, 49611273 - 49611328
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    |||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||    
T  49611273 gatagagatattagaaaaccaaaaggttatgaattttgtgagtataaggatgaaga 49611328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 8561784 - 8561736
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  8561784 ggtgacatttaatttgggaaagactagttttttcccatcatgggaaagc 8561736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 755
Target Start/End: Complemental strand, 43879118 - 43879063
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    |||||||||||| ||||||| || ||||| ||||| |||||||||| |||||||||    
T  43879118 gatagagaaactgggaaacctaagggttacggattctgtgagtatacggatgaaga 43879063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 43737726 - 43737776
Alignment:
Q  117 gatggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    ||||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  43737726 gatggtgccatttaatttgggaaagtagagttatttcccaccatgggaaag 43737776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 4640558 - 4640599
Alignment:
Q  150 tttcccaccatgggaaagcaagtttcaaccattagattaaat 191  Q
    |||||||||||||||||| || ||||||||||||||| ||||    
T  4640558 tttcccaccatgggaaagtaattttcaaccattagatcaaat 4640599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 49611603 - 49611562
Alignment:
Q  125 catttaatttgggaaagattagttttttcccaccatgggaaa 166  Q
    |||||||||||||||||  ||||||||||||| |||||||||    
T  49611603 catttaatttgggaaaggctagttttttcccatcatgggaaa 49611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 6e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 540 - 652
Target Start/End: Original strand, 4371130 - 4371243
Alignment:
Q  540 gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttcca---aagatctc--atactgtttgaaaaatgagttattttggttaatt 634  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||  |||||||||||||||||||| |||||||    ||    
T  4371130 gggtccacctgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttgg----tt 4371225  T
Q  635 agtagctagatattttgt 652  Q
    ||||||||||||||||||    
T  4371226 agtagctagatattttgt 4371243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 16971083 - 16970962
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccc 217  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||  ||||||||||| | || ||||||||||||    
T  16971083 atggtgccatttaatttgggaaagactagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccc 16970984  T
Q  218 tcaatactatattgttctccct 239  Q
    |||| |||  ||| ||||||||    
T  16970983 tcaacactcaatttttctccct 16970962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 16970882 - 16970806
Alignment:
Q  316 agtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 392  Q
    |||||||| |||||||||||||||| ||| |||||||| ||||||||||||||| | |||| |||||||||||||||    
T  16970882 agtaccatcataaccaccaccaccaccatatttaacacctagatctccctcactttctctatattttgtgataattt 16970806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 8226642 - 8226761
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    |||| ||||||||||| ||||||  | ||||||||| |||||| |||| || ||| |||| |||||||||||| |||| | | || |||||| |||||||    
T  8226642 ggtgccatttaatttgagaaagaagaattttttccctccatggaaaagtaaattttaacctttagattaaatggagaacatactcttatcatgctccctc 8226741  T
Q  220 aatactatattgttctccct 239  Q
    ||||||||||| ||||||||    
T  8226742 aatactatatttttctccct 8226761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 2319266 - 2319314
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  2319266 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagc 2319314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 26268344 - 26268392
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  26268344 ggtggcatttaatttgggaaatgttagttttttcccaccatgggaaagc 26268392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 26269069 - 26269021
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  26269069 ggtggcatttaatttgggaaaggttagttttttcccatcatgggaaagc 26269021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 540 - 593
Target Start/End: Original strand, 4363327 - 4363380
Alignment:
Q  540 gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaa 593  Q
    ||||||||||||||||||||||||||||||||||||  | |||| |||||||||    
T  4363327 gggtccacttgttccccactctttcttcccaattgctcctgctgttgcttccaa 4363380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 2320015 - 2319967
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  2320015 ggtggcatttaatttgggaaaggctagttttttcccaccataggaaagc 2319967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 33284071 - 33284024
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  33284071 ggtgccatttaatttgggaaaggttagttttatcccaccatgggaaag 33284024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 33283170 - 33283212
Alignment:
Q  125 catttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||    
T  33283170 catttaatttgggaaaggttagttttatcccatcatgggaaag 33283212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 39166591 - 39166637
Alignment:
Q  122 tggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||| | |||||||||||||| |||| |||||    
T  39166591 tggcatttaatttgggaaaaactagttttttcccactatggaaaagc 39166637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 7625467 - 7625536
Alignment:
Q  114 catgatggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccatta 183  Q
    |||||||||| |||||||||||||||||   | || ||||||| |||||||||| || | ||||||||||    
T  7625467 catgatggtgtcatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccatta 7625536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 39950402 - 39950451
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  39950402 atggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 16427335 - 16427216
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctc 219  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||  ||||||||||| | || ||||||||||||||    
T  16427335 ggtgtcatttaatttgggaaagattagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctc 16427236  T
Q  220 aatactatattgttctccct 239  Q
    || |||  ||| ||||||||    
T  16427235 aacactcaatttttctccct 16427216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 41984727 - 41984775
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  41984727 ggtggcatttaatttgggaaaggctagttttttctcaccatgggaaagc 41984775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 40992222 - 40992294
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||||  || ||| ||||||| ||||||||    
T  40992222 ggtgccatttaatttgggaaaggtttgttttttcctaccatgggaaagttagtttttaaccatttgattaaat 40992294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 41043376 - 41043328
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| |||||    
T  41043376 ggtggcatttaatttgggaaaggctagttttttcccatcatggaaaagc 41043328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 14573261 - 14573308
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 14573308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 16426551 - 16426600
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||| |||||||||||||||||  | ||||||||||||||||| ||||    
T  16426551 atggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaag 16426600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 29315353 - 29315240
Alignment:
Q  126 atttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatact 225  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||  ||||||||||| | || |||||||||||||||| |||    
T  29315353 atttaatttgggaaagactagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccctcaacact 29315254  T
Q  226 atattgttctccct 239  Q
      ||| ||||||||    
T  29315253 caatttttctccct 29315240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 41224315 - 41224391
Alignment:
Q  316 agtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 392  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  41224315 agtaccatcataaccaccaccaccaccatgtttaacacctagatctccctcactttctctatattttgtgatgattt 41224391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 700 - 755
Target Start/End: Complemental strand, 29314924 - 29314869
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  29314924 gatagaaaaactagaaaaccaaaaggtcatggattttgtgagtataaggatgaaga 29314869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 41224114 - 41224201
Alignment:
Q  125 catttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcata 212  Q
    |||| ||||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||||  ||||||||||| | || |||||||    
T  41224114 cattaaatttgggaaagactagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcata 41224201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 48259243 - 48259294
Alignment:
Q  117 gatggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  48259243 gatggtggcatttaatttgggaaagactagttttttcccaccataggaaagc 48259294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 45888028 - 45887980
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  45888028 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagc 45887980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 46757425 - 46757377
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  46757425 ggtggcatttaatttgggaaagactagtttttccccaccatgggaaagc 46757377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 700 - 755
Target Start/End: Original strand, 41224548 - 41224603
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    |||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  41224548 gatagaaaaactggaaaaccaaaaggtcatggattttgtgagtataaggatgaaga 41224603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 29315156 - 29315083
Alignment:
Q  316 agtaccattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 392  Q
    |||||||| |||||||||||||||||   ||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  29315156 agtaccatcataaccaccaccaccat---gtttaacacctagatctccctcactttctctatattttgtgatgattt 29315083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 47332007 - 47331953
Alignment:
Q  114 catgatggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    ||||| |||| |||||||||||||||||  |||||||||||||||||||||||||    
T  47332007 catgaaggtgacatttaatttgggaaaggctagttttttcccaccatgggaaagc 47331953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 44896053 - 44896118
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    |||||||||||||||| |||||||| |||||||||||||||  || ||| ||||||||||||||||    
T  44896053 tttaatttgggaaagactagtttttccccaccatgggaaagttagtttttaaccattagattaaat 44896118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 48259865 - 48259820
Alignment:
Q  121 gtggcatttaatttgggaaagattagttttttcccaccatgggaaa 166  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  48259865 gtggcatttaatttgggaaatgttagttttttcccaccatgggaaa 48259820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 24322400 - 24322352
Alignment:
Q  119 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  24322400 tggtgccatttaatttgggaaaggttagttttatcccaccatgggaaag 24322352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 45887279 - 45887327
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||    
T  45887279 ggtggcgtttaatttgggaaaggctagttttttcccaccatgggaaagc 45887327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 29006347 - 29006418
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaa 190  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||||  || ||| |||||||||||||||    
T  29006347 ggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaa 29006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 29007247 - 29007176
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaa 190  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||||  || ||| |||||||||||||||    
T  29007247 ggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaa 29007176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 4984809 - 4984856
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  4984809 ggtggcatttaatttgggaaaggttagtttttt-ccaccatggaaaagc 4984856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 4985442 - 4985394
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||| ||||||||||||||||   |||||||||||||||||||||||||    
T  4985442 ggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagc 4985394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 4989540 - 4989492
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagc 168  Q
    |||| ||||||||||||||||   |||||||||||||||||||||||||    
T  4989540 ggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagc 4989492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 30915756 - 30915844
Alignment:
Q  142 attagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatatt 230  Q
    ||||||| |||||||||||||||||| || ||| | ||||||||| |||||||||  | | |  |||||||||| ||||| ||||||||    
T  30915756 attagttgtttcccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 30915844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 44909400 - 44909360
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  44909400 tttaatttgggaaaggtaagttttttcccaccatgggaaag 44909360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 30272997 - 30272885
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 226  Q
    |||||||||||||||   | |||||||||| |||||||||| |||||| |||||||||||| ||||||||||| | |  |||||||||||||||||||||    
T  30272997 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatactccctcaatacta 30272898  T
Q  227 tattgttctccct 239  Q
     ||| ||||||||    
T  30272897 gatttttctccct 30272885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 36936738 - 36936626
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 226  Q
    |||||||||||||||   | |||||||||| |||||||||| || ||| |||||||||||| ||| ||||||| | |  |||||||||||||||||||||    
T  36936738 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaaattttaaccattagattcaataaagaatacacttttatcatactccctcaatacta 36936639  T
Q  227 tattgttctccct 239  Q
     ||| ||||||||    
T  36936638 gatttttctccct 36936626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 36936459 - 36936347
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatacta 226  Q
    |||||||||||||||   | |||||||||| |||||||||| || ||| |||||||||||| ||| ||||||| | |  ||||||||||||| |||||||    
T  36936459 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaaattttaaccattagattcaataaagaatacacttttatcatactcccttaatacta 36936360  T
Q  227 tattgttctccct 239  Q
     ||| ||||||||    
T  36936359 gatttttctccct 36936347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 701 - 755
Target Start/End: Complemental strand, 41092514 - 41092460
Alignment:
Q  701 atagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    ||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  41092514 atagaaaaactggaaaaccaaaaggtcatggattttgtgagtataaggatgaaga 41092460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 41348151 - 41348216
Alignment:
Q  127 tttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    ||||||||||||||| ||||||||| |||||||||||||||  || ||| ||||||||||||||||    
T  41348151 tttaatttgggaaaggttagtttttccccaccatgggaaagttagtttttaaccattagattaaat 41348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 43924490 - 43924561
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaat 191  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||| | |||  ||| |||||||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaat 43924561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 41092813 - 41092732
Alignment:
Q  158 catgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatattgttctccct 239  Q
    |||||||||| |||||| |||||||||||  ||||||||||| | |  |||||||||||||||| |||  ||| ||||||||    
T  41092813 catgggaaagtaagttttaaccattagatctaatgaagaatacacttttatcatactccctcaacactcaatttttctccct 41092732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 25876521 - 25876568
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||| ||||||||||||||||||  | |||||||||||||||||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaag 25876568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 30272807 - 30272764
Alignment:
Q  319 accattataaccaccaccaccatcatgtttaacacatagatctc 362  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  30272807 accatcataaccaccaccaccaccatgtttaacacctagatctc 30272764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 34992312 - 34992265
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 34992265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 36936269 - 36936226
Alignment:
Q  319 accattataaccaccaccaccatcatgtttaacacatagatctc 362  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  36936269 accatcataaccaccaccaccaccatgtttaacacctagatctc 36936226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 36936548 - 36936505
Alignment:
Q  319 accattataaccaccaccaccatcatgtttaacacatagatctc 362  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  36936548 accatcataaccaccaccaccaccatgtttaacacctagatctc 36936505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 41092632 - 41092577
Alignment:
Q  337 accatcatgtttaacacatagatctccctcactctttctacattttgtgataattt 392  Q
    |||| |||||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  41092632 accaccatgtttaacacctagatctccctcactttctctatattttgtgatgattt 41092577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 41092171 - 41092244
Alignment:
Q  119 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 191  Q
    ||||| |||||||||||||||||  | ||||||||||||||||| ||||  || ||| ||||||| ||||||||    
T  41092171 tggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttagtttttaaccatttgattaaat 41092244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 700 - 755
Target Start/End: Original strand, 22763 - 22818
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  22763 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaaga 22818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 22171 - 22261
Alignment:
Q  149 ttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatattgttctccct 239  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||| || | | || |||||||||||||||| | || ||| ||||||||    
T  22171 ttttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaacattagatttttctccct 22261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 700 - 755
Target Start/End: Complemental strand, 46739993 - 46739938
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  46739993 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaaga 46739938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 700 - 755
Target Start/End: Complemental strand, 46721386 - 46721331
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 755  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  46721386 gatagagagattagaaaaccaaaaggttatggattttgtgagtataaggatgaaga 46721331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 46740595 - 46740512
Alignment:
Q  138 aaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaa 221  Q
    ||||| |||||||||||||||||||||||| |||||| || |||| ||||||||||| || | | || ||||||||||||||||    
T  46740595 aaagactagttttttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaa 46740512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 46722008 - 46721887
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccc 217  Q
    |||||| ||||||||||||||||||  | |||||| || | ||||||||| |||||| |||| ||| |||||||| |||| | | |  |||||| |||||    
T  46722008 atggtgtcatttaatttgggaaagaagactttttttcctctatgggaaagtaagttttaacctttaaattaaatggagaacatacttttatcatgctccc 46721909  T
Q  218 tcaatactatattgttctccct 239  Q
    ||||||||| ||| ||||||||    
T  46721908 tcaatactagatttttctccct 46721887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 38742223 - 38742103
Alignment:
Q  119 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccct 218  Q
    ||||| |||||||| |||||||||  | ||||||||| | |||| |||| |||||| |||| |||||| ||||| |||| | | || |||||| ||||||    
T  38742223 tggtgccatttaatctgggaaagaagacttttttccctcaatggaaaagtaagttttaacctttagatcaaatggagaacatactcttatcatgctccct 38742124  T
Q  219 caatactatattgttctccct 239  Q
    |||||||| ||| ||||||||    
T  38742123 caatactagatttttctccct 38742103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 700 - 773
Target Start/End: Complemental strand, 38741598 - 38741525
Alignment:
Q  700 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgatt 773  Q
    |||||||| | ||| ||| |||||||||||| ||||||||||||||| |||||||| | | |||||||||||||    
T  38741598 gatagagagattagaaaatcaaaaggttatgaattttgtgagtataaagatgaagaattaaataaaagatgatt 38741525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 418
Target Start/End: Complemental strand, 38742028 - 38741928
Alignment:
Q  319 accattataaccaccaccaccatcatgtttaacacatagatctccctcactctttctacattttgtgataatttgatt-attcgatcaaagattgatatg 417  Q
    ||||| ||||||||||||| || |||||||||||  || |||||  ||||| | |||| |||||||||| |||||||| ||| ||||||| |||||||||    
T  38742028 accatcataaccaccaccatcaccatgtttaacatctaaatctcgttcactttctctatattttgtgatgatttgattaatttgatcaaaaattgatatg 38741929  T
Q  418 g 418  Q
    |    
T  38741928 g 38741928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 38336943 - 38337015
Alignment:
Q  119 tggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaat 191  Q
    ||||||||||||||||||| |||   |||| ||||||||||||||||||| | |||  ||| |||||||||||    
T  38336943 tggtggcatttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaat 38337015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 38337525 - 38337454
Alignment:
Q  120 ggtggcatttaatttgggaaagattagttttttcccaccatgggaaagcaagtttcaaccattagattaaat 191  Q
    |||||| |||||||||||||||   |||| ||||||||||||||||||| | |||  ||| |||||||||||    
T  38337525 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaat 38337454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 44407011 - 44406931
Alignment:
Q  116 tgatggtggcatttaatttgggaa-agattagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaaga 196  Q
    |||||||||||||||   |||||| |||| |||| |||||||||||||||||| || ||| | ||||||||| |||||||||    
T  44407011 tgatggtggcatttagcatgggaatagat-agttgtttcccaccatgggaaagtaaattttacccattagatcaaatgaaga 44406931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 45243037 - 45242988
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||| ||||||||||||||||||  |||| ||| ||||||||||||||    
T  45243037 atggtgccatttaatttgggaaagaagagttcttttccaccatgggaaag 45242988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 50305486 - 50305401
Alignment:
Q  150 tttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatagagtcatatcatactccctcaatactatattgttct 235  Q
    ||||||||||||| |||| || ||| |||||||||||| ||||||||  | | || ||||||||||| | || |||||||| ||||    
T  50305486 tttcccaccatggaaaagtaaattttaaccattagattgaatgaagagcatactcttatcatactccatgaacactatattattct 50305401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 17337 - 17386
Alignment:
Q  118 atggtggcatttaatttgggaaagattagttttttcccaccatgggaaag 167  Q
    |||||| |||||||||||| ||||  | ||||||||||||||||||||||    
T  17337 atggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaag 17386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University