View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_50 (Length: 272)
Name: NF11780_low_50
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 4367068 - 4367305
Alignment:
| Q |
20 |
acgaaaccagtactctctatattcatcggtcacagaataatcactcaaacagatcaatccattgcatgtgccaaccatacgatagcaatctttgttgacc |
119 |
Q |
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| T |
4367068 |
acgaaaccagtactctctatattcatcggtcacagaataatcactcaaacagatcaatccattgcatgtgccaaccatacgatagcaatctttgttgacc |
4367167 |
T |
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| Q |
120 |
aaatgatagtaagggtcgatggaaaaggtgaatgacggattctcaattaaatggtgcatggagtaaggaacgacactgcaatccagcccaggtacatcgt |
219 |
Q |
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| T |
4367168 |
aaatgatagtaagggtcgatggaaaaggtgaatgacggattctcaattaaatggtgcatggagtaaggaacgatgctgcaatccagcccaggtacatcgt |
4367267 |
T |
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| Q |
220 |
cactgccatccgaggaatcgcctggtgtgagatctgtg |
257 |
Q |
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| T |
4367268 |
cactgccatccgaggaatcgcctggtgtgagatctgtg |
4367305 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 29431731 - 29431785
Alignment:
| Q |
146 |
ggtgaatgacggattctcaattaaatggtgcatggagtaaggaacgacactgcaa |
200 |
Q |
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| T |
29431731 |
ggtgaatgaagggttctcaattaaacggggcatggagtagggaacaacactgcaa |
29431785 |
T |
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