View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_53 (Length: 263)
Name: NF11780_low_53
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 26138170 - 26137937
Alignment:
| Q |
17 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaaaaagtaaataaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26138170 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaaaaagtaaataaaaa |
26138071 |
T |
|
| Q |
117 |
tcaaacatcataatctcatagttaatttataaacataccaaattggaaaatgtgcttatttcactcgccttgttcnnnnnnntagacgagagagacttcg |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26138070 |
tcaaacatcataatctcatagttaatttataaatataccaaattggaaaatgtgcttatttcactcgccttgttcaaaaaaatagacgagagagacttcg |
26137971 |
T |
|
| Q |
217 |
aaggacatctattccatttcaataatctcaaact |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
26137970 |
aaggacatctattccatttcaataatctcaaact |
26137937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 28125617 - 28125795
Alignment:
| Q |
17 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagaca-aaaggaaaaagtaaata--- |
112 |
Q |
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||||||||||||| || |||||||||| |||| ||| || |||| |||||||||| |||||||||||||||| ||| |||| | ||| ||||| |
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| T |
28125617 |
gagacatcgggtatatgggttaaatattcacaaaagttcaaagtcaagactttcatattctcgaacttctgcataaacacaaagaagaaacaaaatattc |
28125716 |
T |
|
| Q |
113 |
aaaatcaaacatcataatctcatagttaatttataaacataccaaattggaaaatgtgcttatttcactcgccttgttc |
191 |
Q |
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||||| ||||| ||||||| ||||| |||| ||||| |||| |||| ||||||| ||||||||||| ||||||||| |
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| T |
28125717 |
aaaataaaacacaataatctaatagtgaattcataaatatacacaatttgaaaatgaacttatttcacttgccttgttc |
28125795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 26826011 - 26825825
Alignment:
| Q |
65 |
actttcatatactcgaacttctgcatagacaaaaggaaaaagtaaa-taaaaatcaaacatcataatctcatagttaatttataaacataccaaattgga |
163 |
Q |
| |
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|||||||||| |||||||||||||||| ||| || |||||| ||| ||||||| ||||| ||||||| |||| |||||||||| |||| ||||||| |
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| T |
26826011 |
actttcatattctcgaacttctgcataaacacaaagaaaaaacaaactaaaaataaaacacaataatctagtagtgaatttataaatatacacaattgga |
26825912 |
T |
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| Q |
164 |
aaatgtgcttatttcactcgccttgttcnnnnnnntagacgagagagacttcgaaggacatctattccatttcaataatctcaaact |
250 |
Q |
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||||| ||||||||||| ||||||||| |||| || ||||| | ||||||| | |||| ||||||||||| ||||||||| |
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|
| T |
26825911 |
aaatgaacttatttcacttgccttgttcaaaatactagatgatagagaatccgaaggatacctatcccatttcaatactctcaaact |
26825825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26637792 - 26637718
Alignment:
| Q |
17 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcata |
91 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| ||| || |||| ||||||||||| | ||||||||||||| |
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| T |
26637792 |
gagacatcgggtatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcata |
26637718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26743758 - 26743684
Alignment:
| Q |
17 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcata |
91 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| ||| || |||| ||||||||||| | ||||||||||||| |
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|
| T |
26743758 |
gagacatcgggtatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcata |
26743684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 26658024 - 26657981
Alignment:
| Q |
207 |
agagacttcgaaggacatctattccatttcaataatctcaaact |
250 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26658024 |
agagacttcgaaggacatcctttccatttcaaaaatctcaaact |
26657981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 26763995 - 26763952
Alignment:
| Q |
207 |
agagacttcgaaggacatctattccatttcaataatctcaaact |
250 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
26763995 |
agagacttcgaaggacatcctttccatttcaaaaatctcaaact |
26763952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 26648718 - 26648633
Alignment:
| Q |
17 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaa |
102 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||| ||| || |||| |||||||||| || ||||||||||||| ||| |||||| |
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| T |
26648718 |
gagacatcaggtatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaa |
26648633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 26754686 - 26754601
Alignment:
| Q |
17 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaa |
102 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||| ||| || |||| |||||||||| || ||||||||||||| ||| |||||| |
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| T |
26754686 |
gagacatcaggtatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaa |
26754601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 27609044 - 27609129
Alignment:
| Q |
17 |
gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaa |
102 |
Q |
| |
|
||||||||||||| || |||||||||| ||||| ||| || |||| |||||||||| || |||||||||||| ||| |||||| |
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| T |
27609044 |
gagacatcgggtatatgtgttaaatattcacaatagttcaatgtcaagactttcatattctgaaacttctgcatacacacaaggaa |
27609129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 17991162 - 17991217
Alignment:
| Q |
36 |
ttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcata |
91 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||| |||||||||||||||| |
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|
| T |
17991162 |
ttaaatattgacaacggttaaatgtcaagactttcatattctcgaacttctgcata |
17991217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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