View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_54 (Length: 259)

Name: NF11780_low_54
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_54
NF11780_low_54
[»] chr1 (5 HSPs)
chr1 (11-259)||(4367282-4367530)
chr1 (51-185)||(4017554-4017688)
chr1 (51-181)||(10218126-10218256)
chr1 (80-185)||(4015736-4015841)
chr1 (81-176)||(21897327-21897422)
[»] chr3 (1 HSPs)
chr3 (121-241)||(3624916-3625036)
[»] chr7 (10 HSPs)
chr7 (15-147)||(29105856-29105988)
chr7 (49-184)||(29477208-29477343)
chr7 (69-224)||(29922857-29923012)
chr7 (49-147)||(29480368-29480466)
chr7 (93-184)||(47479630-47479721)
chr7 (16-224)||(29074123-29074330)
chr7 (53-146)||(29436502-29436595)
chr7 (66-147)||(29446534-29446615)
chr7 (69-146)||(29454982-29455059)
chr7 (85-193)||(29894545-29894653)
[»] chr4 (1 HSPs)
chr4 (114-223)||(53430890-53430999)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 4367530 - 4367282
Alignment:
Q  11 tgagatgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367530 tgagatgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatat 4367431  T
Q  111 cttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367430 cttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctctgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgc 4367331  T
Q  211 tcttcacactaatctcgcaccacatcacagatctcacaccaggcgattc 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367330 tcttcacactaatctcgcaccacatcacagatctcacaccaggcgattc 4367282  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 4017688 - 4017554
Alignment:
Q  51 ccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacc 150  Q
    |||| ||||||||| || |||||||| |  ||||||||||||||||| ||||| |||| |||||| | ||| |||||||| ||||| |||||||||| ||    
T  4017688 ccggcggtcctctccgaggatctcatcgtcgaggtactttcgtttcttcccgtgaaatctcttctccaatttaggtgtgtgagtaaatcttggaaaaccc 4017589  T
Q  151 tcatctgtgatcccgcctttgtgaaactacacctt 185  Q
    | || | ||||||| | ||||||||| | ||||||    
T  4017588 taatttctgatcccacttttgtgaaattgcacctt 4017554  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 10218126 - 10218256
Alignment:
Q  51 ccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacc 150  Q
    |||| ||||||||| || |||||| |||| ||||||||||| ||||| || || |||| |||| || | ||||||||||| ||||| |||||||||| ||    
T  10218126 ccggcggtcctctccgaagatctcgttgccgaggtactttcctttcttccggtgaaatctcttgtttgcttcaggtgtgtgagtaaatcttggaaaaccc 10218225  T
Q  151 tcatctgtgatcccgcctttgtgaaactaca 181  Q
    | || | ||| ||| | ||||||||| ||||    
T  10218226 taatttctgaacccacttttgtgaaattaca 10218256  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 4015841 - 4015736
Alignment:
Q  80 tgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaacta 179  Q
    |||||||||||| ||||| || || | || |||| |||||||||||||||| |||||||||||||||| ||| || |  ||| || ||||||||||| |     
T  4015841 tgaggtactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaaaccctaatttccgattccacctttgtgaaattg 4015742  T
Q  180 cacctt 185  Q
    ||||||    
T  4015741 cacctt 4015736  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 21897422 - 21897327
Alignment:
Q  81 gaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaa 176  Q
    ||||||||||||||||| || |||| || |||| |||||||||||| ||| ||||||| |||||||| ||| || |  || ||| |||||||||||    
T  21897422 gaggtactttcgtttcttcctgttagatctcttattcgattcaggtctgtaagtaagtgttggaaaaccctaatttccgaccccacctttgtgaaa 21897327  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 3624916 - 3625036
Alignment:
Q  121 tcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgctcttcacact 220  Q
    |||||||||| ||||| ||||||||||  ||||||| ||||||||| || |||||| | ||||| |  ||||||||| ||| |||||  |||||||||||    
T  3624916 tcaggtgtgtgagtaaatcttggaaaacactcatctctgatcccgctttcgtgaaattgcacctcaagagatcagcatcacgaaatccactcttcacact 3625015  T
Q  221 aatctcgcaccacatcacaga 241  Q
    |||| |||| |||||||||||    
T  3625016 aatcacgcatcacatcacaga 3625036  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 29105856 - 29105988
Alignment:
Q  15 atgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttc 114  Q
    |||||||| ||||| || | |||||||||| | ||| ||||||| ||| | ||||||||||| || || || ||||| || || ||||||| || |||||    
T  29105856 atgaatatacaatcggcaaagtctatggctctgtcgtcggtggttctccccgatgatctcatcgcagaagttctttccttccttcccgttatatttcttc 29105955  T
Q  115 ttcgattcaggtgtgtcagtaagtcttggaaaa 147  Q
    ||||||| |||| |||||| |||||||||||||    
T  29105956 ttcgatttaggtctgtcagcaagtcttggaaaa 29105988  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 29477343 - 29477208
Alignment:
Q  49 cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaa 148  Q
    |||||||||||||  |||| |||||||| || ||| ||||||| || || ||||| |||| |||| ||||| |||  ||||| || ||||||||||||      
T  29477343 cgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatc 29477244  T
Q  149 cctcatctgtgatcccgcctttgtgaaactacacct 184  Q
    ||| |||| |||||||  |||||||||| |||||||    
T  29477243 cctaatctctgatcccagctttgtgaaattacacct 29477208  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 29923012 - 29922857
Alignment:
Q  69 gatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcct 168  Q
    |||||||| ||||| |||||||| ||||| || || |||  |||||||||||||| | |||| ||||||||||||||||  |||||||  |||||| | |    
T  29923012 gatctcatcgctgaagtactttcctttcttccggtgaaacctcttcttcgattcaagagtgttagtaagtcttggaaaatactcatctccgatcccacat 29922913  T
Q  169 ttgtgaaactacaccttagtagatcagcaacacaaaatctgctcttcacactaatc 224  Q
    | |||||| | ||||| |  |||||||||  ||||||||  | |||||| ||||||    
T  29922912 tcgtgaaattgcacctcaagagatcagcagtacaaaatcctcacttcaccctaatc 29922857  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 29480466 - 29480368
Alignment:
Q  49 cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa 147  Q
    |||||||||||||  |||||||||||||  | ||| ||||||| || || ||||| |||| || | ||||||||| ||||||| |||||||||||||||    
T  29480466 cgccggtggtccttcctgatgatctcatcacagagttactttccttccttcccgtcaaatctcctgttcgattcaagtgtgtctgtaagtcttggaaaa 29480368  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 47479721 - 47479630
Alignment:
Q  93 tttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacacct 184  Q
    ||||| |||||| ||| |||| |||||||||| ||||| |||||||||||||||| ||| || |  ||||| ||||| |||||||| |||||    
T  47479721 tttcttcccgttgaatttcttattcgattcagttgtgtaagtaagtcttggaaaaccctaatttccgatcctgccttcgtgaaactgcacct 47479630  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 29074123 - 29074330
Alignment:
Q  16 tgaatatccaatcagctacgtctatggctttatcgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttct 115  Q
    ||||||| ||||| || | |||||||||| | ||| ||||||| ||  | ||||||||||| || || || ||||| || || ||| ||| || ||||||    
T  29074123 tgaatatacaatcggcaaagtctatggctctgtcgtcggtggttcttcccgatgatctcatcgcagaagttctttccttccttccc-ttatatttcttct 29074221  T
Q  116 tcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgctcttc 215  Q
    |||||| |||| |||||| |||||||||||||  || || |   |||| ||||| |||||| | || || |  |||||||||||||||||||  | ||||    
T  29074222 tcgatttaggtctgtcagcaagtcttggaaaactcttatttccaatcctgccttcgtgaaattgcatctcaagagatcagcaacacaaaatccacacttc 29074321  T
Q  216 acactaatc 224  Q
    ||| |||||    
T  29074322 acagtaatc 29074330  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 29436595 - 29436502
Alignment:
Q  53 ggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaa 146  Q
    |||||| ||| |||| ||||||||  | ||| ||||| ||||||| ||||||||||   |||||| ||| || ||||||||| |||||||||||    
T  29436595 ggtggttctccctgacgatctcatcaccgagatacttccgtttcttcccgttaaatccattcttcaatttagatgtgtcagtgagtcttggaaa 29436502  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 29446615 - 29446534
Alignment:
Q  66 gatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa 147  Q
    ||||||||||| || |||||  |||| || || ||||| |||| |||| ||||||||| |||||||| ||||| ||||||||    
T  29446615 gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaa 29446534  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 29455059 - 29454982
Alignment:
Q  69 gatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaa 146  Q
    |||||||| |||||||||||||| | ||| ||||| |||  |||||||| ||||||||| || | ||||| |||||||    
T  29455059 gatctcatcgctgaggtactttcttatcttcccgtcaaaattcttcttcaattcaggtgcgtgaataagtattggaaa 29454982  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 29894545 - 29894653
Alignment:
Q  85 tactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacacct 184  Q
    ||||||| || || || |||| || |||| |||||||||  ||||| || ||||||||||||| ||| |||| ||||||| |||| || ||| |||||||    
T  29894545 tactttccttacttccggttatatctcttgttcgattcacttgtgttagcaagtcttggaaaaccctaatctttgatcccaccttcgtcaaattacacct 29894644  T
Q  185 tagtagatc 193  Q
     | ||||||    
T  29894645 caatagatc 29894653  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 53430999 - 53430890
Alignment:
Q  114 cttcgattcaggtgtgtcagtaagtcttggaaaaacctcatctgtgatcccgcctttgtgaaactacaccttagtagatcagcaacacaaaatctgctct 213  Q
    |||| |||||| || ||||||||||||||||||| ||||||||  ||  |||| ||||||||| | ||||| ||||||||| |||| | |||||  |  |    
T  53430999 cttcaattcagatgcgtcagtaagtcttggaaaaccctcatctccgactccgcttttgtgaaattgcacctcagtagatcatcaactcgaaatcctcaat 53430900  T
Q  214 tcacactaat 223  Q
    ||||||||||    
T  53430899 tcacactaat 53430890  T

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