View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_57 (Length: 251)
Name: NF11780_low_57
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 26125782 - 26126012
Alignment:
| Q |
5 |
tggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaat--cggaaaggatttt |
102 |
Q |
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| T |
26125782 |
tggaatatttcatggtgagttaattaaatgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatatcggaaaggatttt |
26125881 |
T |
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| Q |
103 |
tctcagatcatgggataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggttt |
202 |
Q |
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| T |
26125882 |
tctcatgtcatggtataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatgcagttatggttt |
26125981 |
T |
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| Q |
203 |
tgtttacacaacatgctatcaactcacttat |
233 |
Q |
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| T |
26125982 |
tgtttacacaacatgctatcaactcacttat |
26126012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 26127540 - 26127727
Alignment:
| Q |
1 |
aagatggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatt |
100 |
Q |
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| T |
26127540 |
aagatggaatattgcatgatgagttaattaagcatttaataataaagtggcaaaaaacttgaaggataaggtaacatactagcataaattggaaagaatt |
26127639 |
T |
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| Q |
101 |
tttctcagatcatgggataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttga |
188 |
Q |
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| T |
26127640 |
tttctcacgtcatgtgataattctattgtctttcgaaaagatgatgactatcttggaaaattcttaataaagttattatgaaccttga |
26127727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 26126660 - 26126889
Alignment:
| Q |
5 |
tggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttc |
104 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||| ||| ||| ||||||||| |||| ||||| ||||| || || || |
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| T |
26126660 |
tggaatattgcatggtgagttaattaagtatttaataatgaagtgacaataaatcataaacatcaggtaacatactagcttaaattggaaacgaattctc |
26126759 |
T |
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| Q |
105 |
tcagatcatgggataatattattgtctttcagaaagatgataa-ctatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggtttt |
203 |
Q |
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| T |
26126760 |
ttatgtcacgttataaatttattgtctttcagaaagatgataaactatcttggaaaattcttaatgaatttatcatgaacattgaggcatttaccgtttt |
26126859 |
T |
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| Q |
204 |
gtttacacaacatgctatcaactcacttat |
233 |
Q |
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| T |
26126860 |
gtttacacaacaagctatcaaatcatttat |
26126889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 26124909 - 26125137
Alignment:
| Q |
5 |
tggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttc |
104 |
Q |
| |
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||||||||||||||| |||||||||| | ||||||| |||||| ||| ||| ||||| |||||||||| || ||||||||||| | |||||| || || |
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| T |
26124909 |
tggaatattgcatggagagttaattatgcatttaatattaaagtcacaataaattttaatcataaggtaatatactagagtaaattgaaaaggaattctc |
26125008 |
T |
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| Q |
105 |
tcagatcatgggataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggttttg |
204 |
Q |
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| T |
26125009 |
acaatgcacgagataatttcattgtctttcggaaagataaacattgtctcgggaaattcttaatgaacttatcatgaagcttgaggcatttatcgttttg |
26125108 |
T |
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| Q |
205 |
tttacacaacatgctatcaactcacttat |
233 |
Q |
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| T |
26125109 |
tttacccaacatgctatcaaatcatttat |
26125137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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