View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_6 (Length: 736)

Name: NF11780_low_6
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_6
NF11780_low_6
[»] chr4 (2 HSPs)
chr4 (17-719)||(55448397-55449107)
chr4 (169-223)||(624548-624600)
[»] chr8 (2 HSPs)
chr8 (424-719)||(33522123-33522419)
chr8 (169-223)||(26217859-26217911)
[»] chr5 (3 HSPs)
chr5 (158-223)||(25460719-25460783)
chr5 (169-223)||(18890394-18890448)
chr5 (156-223)||(6167280-6167345)
[»] scaffold0003 (1 HSPs)
scaffold0003 (158-217)||(315723-315780)
[»] chr6 (1 HSPs)
chr6 (169-224)||(6196299-6196352)
[»] chr3 (2 HSPs)
chr3 (169-223)||(40739161-40739213)
chr3 (177-223)||(34102134-34102180)
[»] scaffold0006 (1 HSPs)
scaffold0006 (158-204)||(60336-60382)
[»] chr2 (1 HSPs)
chr2 (158-196)||(43398402-43398440)
[»] chr1 (2 HSPs)
chr1 (155-223)||(5863040-5863106)
chr1 (167-196)||(35283594-35283623)


Alignment Details
Target: chr4 (Bit Score: 645; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 17 - 719
Target Start/End: Complemental strand, 55449107 - 55448397
Alignment:
Q  17 acatcacgaaacaacaatagagaagaagcagaactatcattttctgaatggttggaggtggatgagcatctggctgtgtggttcaaggtatatatacata 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449107 acatcacgaaacaataatagagaagaagcagaactatcattttctgaatggttggaggtggatgagcatctggctgtgtggttcaaggtatatatacata 55449008  T
Q  117 tgtgtgtatggtgctatcaaaatttagttgtttactttatattttctttattaagtagtttagtggttagagctcacacatttttaaaacgtggagaagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55449007 tgtgtgtatggtgctatcaaaatttagttgtttactttatattttctttattaagtagtctagtggttagagctcacacatttttaaaacgtggagaagt 55448908  T
Q  217 gaggtgtaagctgt-tgaggttcgaaatttgttaattaatgatttttcttatgtttgtttattatccta-------gtacatcttaccagtgagtcttat 308  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||    
T  55448907 gaggtgtaagctgtctgagattcgaaatatgttaattaatgatttttcttatgtttgtttattatcctaattcctagtacatcttaccagttagtcttat 55448808  T
Q  309 ctagcttgtttaatgttgtatttatttattcattacaaaccggatgctttgctctactattgatagatctcaattcaccaaaaattgaacttgaattatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448807 ctagcttgtttaatgttgtatttatttattcattacaaaccggatgctttgctctactattgatagatctcaattcaccaaaaattgaacttgaattatg 55448708  T
Q  409 agcaatgaaaaataagatgcatgttaattttgtatcattgtctttgcagtggaaagagaattggcatgcaggaatcaaatgtgcaagtgctgattggcca 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448707 agcaatgaaaaataagatgcatgttaattttgtatcattgtctttgcagtggaaagagaattggcatgcaggaatcaaatgtgcaagtgctgattggcca 55448608  T
Q  509 ttatcaaccataaaagccaaaccaactaatgataatgagcagaacaaatatattgtcattttttcgccagaaacaaggaattattcatgggttgatatgc 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  55448607 ttatcaaccataaaagccaaaccaactaatgataatgagcagaacaaatatattgtaattttttcgccagaaacaaggaactattcatgggttgatatgc 55448508  T
Q  609 ttcttgttaaatcaattcatgagtttcctcaacctatagcatatgaaacttatcatgaaggattgaaaatggtacaagacttgacaattgcacgacaatt 708  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448507 ttcttgttaaatcaattcatgagtttcctcaaccaatagcatatgaaacttatcatgaaggattgaaaatggtacaagacttgacaattgcacgacaatt 55448408  T
Q  709 tataatgcaaa 719  Q
    |||||||||||    
T  55448407 tataatgcaaa 55448397  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 624600 - 624548
Alignment:
Q  169 aagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  624600 aagtagtttagtggttagagctcacacatttt--aaatgtggagaagtggggtgt 624548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 6e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 424 - 719
Target Start/End: Complemental strand, 33522419 - 33522123
Alignment:
Q  424 gatgcatgttaattt-tgtatcattgtctttgcagtggaaagagaattggcatgcaggaatcaaatgtgcaagtgctgattggccattatcaaccataaa 522  Q
    ||||||||||||||| ||| || ||||||||||||||| ||| ||| ||| ||||||| |||||||||||||  |||||||||||||||||||   | ||    
T  33522419 gatgcatgttaatttgtgtgtctttgtctttgcagtgggaagggaagtggaatgcaggcatcaaatgtgcaatggctgattggccattatcaattgtgaa 33522320  T
Q  523 agccaaaccaactaatgataatgagcagaacaaatatattgtcattttttcgccagaaacaaggaattattcatgggttgatatgcttcttgttaaatca 622  Q
    ||||||||||||| ||| | |||| || | ||||| | | ||||||||||| || |||||||||| || ||||||||||||||||||||||||| |||||    
T  33522319 agccaaaccaactcatgttgatgaacaaagcaaatgtttcgtcattttttctccggaaacaaggagtttttcatgggttgatatgcttcttgttcaatca 33522220  T
Q  623 attcatgagtttcctcaacctatagcatatgaaacttatcatgaaggattgaaaatggtacaagacttgacaattgcacgacaatttataatgcaaa 719  Q
    ||| || ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||   ||||| |||||||||||||||||||    
T  33522219 attgataagtttcctcaacctatagcatataaaacttatcaagaaggattgcaaatggtacaagacttggggattgcgcgacaatttataatgcaaa 33522123  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 26217911 - 26217859
Alignment:
Q  169 aagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    |||||||||||||||| ||| |||||||||||  ||| |||||||||||||||||    
T  26217911 aagtagtttagtggttggagatcacacatttt--aaatgtggagaagtgaggtgt 26217859  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 25460719 - 25460783
Alignment:
Q  158 ttttctttattaagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||    
T  25460719 ttttttttatcaagtagtctagtggttagagctcacacattttt-aaatgtggagaagtggggtgt 25460783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 18890448 - 18890394
Alignment:
Q  169 aagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    ||||||| |||||||||||| |||||||||||| ||| ||||||||||| |||||    
T  18890448 aagtagtctagtggttagaggtcacacattttttaaatgtggagaagtggggtgt 18890394  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 6167345 - 6167280
Alignment:
Q  156 tattttctttattaagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    |||||| ||| ||||||||  |||||| |||||||||||||||||  ||| |||||||||||||||||    
T  6167345 tattttttttgttaagtagcctagtggctagagctcacacatttt--aaatgtggagaagtgaggtgt 6167280  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 315780 - 315723
Alignment:
Q  158 ttttctttattaagtagtttagtggttagagctcacacatttttaaaacgtggagaagtg 217  Q
    |||| ||||| |||||||||||||||||||| |||||||||||  ||| |||||||||||    
T  315780 ttttttttatcaagtagtttagtggttagagttcacacatttt--aaatgtggagaagtg 315723  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 6196299 - 6196352
Alignment:
Q  169 aagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgta 224  Q
    ||||| ||||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  6196299 aagtaatttagtggttaaagctcacacatttt--aaacgtggagaagtgagatgta 6196352  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 40739161 - 40739213
Alignment:
Q  169 aagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    ||||||| |||||| |||||||||||||||||  |||| ||||||||||||||||    
T  40739161 aagtagtctagtggctagagctcacacatttt--aaacatggagaagtgaggtgt 40739213  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 34102180 - 34102134
Alignment:
Q  177 tagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    |||||||| |||||||||||||||| ||| |||||||| ||||||||    
T  34102180 tagtggttggagctcacacattttttaaatgtggagaaatgaggtgt 34102134  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 60382 - 60336
Alignment:
Q  158 ttttctttattaagtagtttagtggttagagctcacacatttttaaa 204  Q
    |||| ||||| |||||| ||||||||||||| |||||||||||||||    
T  60382 ttttttttatcaagtagcttagtggttagagttcacacatttttaaa 60336  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 43398440 - 43398402
Alignment:
Q  158 ttttctttattaagtagtttagtggttagagctcacaca 196  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  43398440 ttttctttatcaagtagtctagtggttagagctcacaca 43398402  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 5863106 - 5863040
Alignment:
Q  155 atattttctttattaagtagtttagtggttagagctcacacatttttaaaacgtggagaagtgaggtgt 223  Q
    ||||||| ||| | ||||||| ||||||||||| |||||||||||| || ||  |||||||||||||||    
T  5863106 atattttttttgtcaagtagtctagtggttagaactcacacattttaaatac--ggagaagtgaggtgt 5863040  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 35283623 - 35283594
Alignment:
Q  167 ttaagtagtttagtggttagagctcacaca 196  Q
    ||||||||||||||||||||||||||||||    
T  35283623 ttaagtagtttagtggttagagctcacaca 35283594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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