View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_60 (Length: 241)
Name: NF11780_low_60
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 29709027 - 29708804
Alignment:
| Q |
1 |
taaaattttctaacagaaagaacattgttttcatcctttcatcaaagaaataaaatgtatattagaaggcatacaaatccatgacagtcatttgagtatg |
100 |
Q |
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| T |
29709027 |
taaaattttctaacagaaagaacattgttttcatcctttcatcaaagaaataaaatgtatattagaaggcatacaaatccatgacagtcatttgagtatg |
29708928 |
T |
|
| Q |
101 |
agatatgttgtggatatagcagatactattatagataatggctttcttcaatctgtcattctaagaagtaaattaacttatgcagacttcagtttcttct |
200 |
Q |
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| T |
29708927 |
agatatattgtggatatagcagatactattatagataatggctttattcgatctgtcactctatgaagtaaattaactaatgcagacttcagtttcttct |
29708828 |
T |
|
| Q |
201 |
gccaaaataattttcatgtcttaac |
225 |
Q |
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||| ||||||||||||||||||||| |
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| T |
29708827 |
gcc-aaataattttcatgtcttaac |
29708804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 41489848 - 41489717
Alignment:
| Q |
1 |
taaaattttctaacagaaagaacattgttttcatcctttcatcaaagaaataaa-atgtatattaga------aggcatacaaatccatgacagtcattt |
93 |
Q |
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|||||||||| ||||||||||||||| |||| || |||||||||||| || || || || |||||| || |||||||| |||||| |||||||| |
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| T |
41489848 |
taaaattttcaaacagaaagaacattctttttattctttcatcaaaggaaaaagtatatacattagatttaggagccatacaaaaccatgaaagtcattt |
41489749 |
T |
|
| Q |
94 |
gagtatgagatatgttgtggatatagcagata |
125 |
Q |
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| T |
41489748 |
gagtatgagatatattgtggatataggagata |
41489717 |
T |
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