View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_62 (Length: 241)

Name: NF11780_low_62
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_62
NF11780_low_62
[»] chr1 (4 HSPs)
chr1 (4-231)||(26138272-26138499)
chr1 (9-197)||(28125322-28125510)
chr1 (26-197)||(265960-266131)
chr1 (4-197)||(28130353-28130546)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-206)||(61959-62147)
[»] chr6 (35 HSPs)
chr6 (33-197)||(25513242-25513406)
chr6 (18-206)||(27425216-27425404)
chr6 (33-197)||(26145364-26145528)
chr6 (6-197)||(26979750-26979941)
chr6 (11-197)||(26826168-26826354)
chr6 (6-198)||(26961451-26961643)
chr6 (26-197)||(26952137-26952308)
chr6 (27-197)||(25076212-25076382)
chr6 (11-197)||(26863953-26864139)
chr6 (51-197)||(27662845-27662991)
chr6 (11-198)||(27602354-27602538)
chr6 (33-197)||(25547335-25547499)
chr6 (33-197)||(25582074-25582238)
chr6 (33-197)||(26058274-26058438)
chr6 (33-197)||(26078244-26078408)
chr6 (9-197)||(31286919-31287107)
chr6 (8-206)||(26851011-26851209)
chr6 (18-107)||(27528994-27529083)
chr6 (10-197)||(26648826-26649013)
chr6 (10-197)||(26754794-26754981)
chr6 (83-197)||(27716129-27716243)
chr6 (12-197)||(26886452-26886640)
chr6 (9-198)||(28794752-28794941)
chr6 (95-194)||(25485410-25485509)
chr6 (83-197)||(28788802-28788916)
chr6 (153-198)||(27675205-27675250)
chr6 (77-198)||(27703845-27703966)
chr6 (153-197)||(27681471-27681515)
chr6 (51-197)||(27608749-27608895)
chr6 (153-198)||(27590611-27590656)
chr6 (153-198)||(27696219-27696264)
chr6 (26-98)||(26637916-26637988)
chr6 (26-98)||(26743882-26743954)
chr6 (10-103)||(26939378-26939471)
chr6 (154-198)||(26805004-26805048)
[»] chr4 (9 HSPs)
chr4 (18-206)||(18076151-18076339)
chr4 (12-190)||(18677232-18677410)
chr4 (12-190)||(18721746-18721924)
chr4 (12-182)||(18729176-18729346)
chr4 (12-190)||(18697075-18697253)
chr4 (26-190)||(18687287-18687451)
chr4 (26-185)||(18653155-18653314)
chr4 (153-190)||(18682391-18682428)
chr4 (153-190)||(18726667-18726704)
[»] chr2 (1 HSPs)
chr2 (7-192)||(17990853-17991038)
[»] scaffold0349 (1 HSPs)
scaffold0349 (83-197)||(15702-15816)
[»] scaffold0277 (2 HSPs)
scaffold0277 (83-197)||(11283-11397)
scaffold0277 (77-197)||(2320-2440)
[»] chr8 (1 HSPs)
chr8 (54-197)||(22023667-22023808)
[»] scaffold0419 (1 HSPs)
scaffold0419 (77-197)||(9946-10066)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 26138272 - 26138499
Alignment:
Q  4 caaagggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccaga 103  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26138272 caaagggttgcatcaagctcgagagttttccacccttacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccaga 26138371  T
Q  104 attagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttgctcac 203  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26138372 attagttggtaggttgacaaatataaaagacatttggttgtatggaacctccataggagaattgccattttcatttcaaaatttcagtgaacttgctcac 26138471  T
Q  204 ttatatctaagtggatgtggaaagctca 231  Q
    ||||||||||||||||||||||||||||    
T  26138472 ttatatctaagtggatgtggaaagctca 26138499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 28125510 - 28125322
Alignment:
Q  9 ggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattag 108  Q
    ||||||| |||||||| ||||||||| ||| |||||||||||| ||||||| ||||| |||||  |   ||| ||||||||||||||||||||||||||     
T  28125510 ggttgcagcaagctcgagagttttccccccttacagttgacctgtcttaaggaattgaaactcagtgaatgtgagagtctcaagagttttccagaattat 28125411  T
Q  109 ttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    | || | | ||||||||||| |||| |||||||||  ||| || |||||| ||||||| |||||||||||||||||| |||||||||||    
T  28125410 taggcaagatgacaaatatagaagagatttggttgcgtggaacttccataagagaattaccattttcatttcaaaatctcagtgaactt 28125322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 266131 - 265960
Alignment:
Q  26 gagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaat 125  Q
    ||||||||||||| ||||  || ||||||||||| || |||||||||||   |||  ||||||||| || |||||| ||||| |  | | | ||||||||    
T  266131 gagttttccacccttacaactgccctctcttaaggaaatggaactctctgggtgttggagtctcaatagctttccaaaattattatgcaagatgacaaat 266032  T
Q  126 ataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    ||| || |||||| ||||||||  || |||||| |||||||||||| ||||||||||||| |||||| ||||    
T  266031 atagaaaatattttgttgtatgaaacttccataagagaattgccatcttcatttcaaaatctcagtggactt 265960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 28130546 - 28130353
Alignment:
Q  4 caaagggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccaga 103  Q
    ||||||||||||  ||||||  || |||||| ||| ||| |||||| ||||||||| |||||||||||      ||| |||||||||| |  ||||||||    
T  28130546 caaagggttgcaggaagctcaagaattttccccccttacggttgacttctcttaaggaattggaactcagggaatgtgagagtctcaaaaaatttccaga 28130447  T
Q  104 attagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |||| | || | ||||||||||||| |||| ||| |||||  ||  || |||||| ||||||| |||||||||||||||||| | |||||||||    
T  28130446 attattaggcaagttgacaaatatacaagagattaggttgagtgaaacttccataagagaattaccattttcatttcaaaatctaagtgaactt 28130353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 61959 - 62147
Alignment:
Q  18 aagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggt 117  Q
    ||||||| ||||||||||||| ||||||   |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |  | | |     
T  61959 aagctcgagagttttccacccttacagtctccctctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattattatgcaaga 62058  T
Q  118 tgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttgctcactta 206  Q
    ||||||||||||||  ||| | |||| | |  || |||||||||||||| |||||||| ||||||||| | |||||||||  |||||||    
T  62059 tgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaaatcttagtgaacttcgtcactta 62147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 25513242 - 25513406
Alignment:
Q  33 ccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaag 132  Q
    |||||| ||||| || |||||||||||||||| ||| |||||   |||||||||||||||| ||||||||||||| |  ||| | |||||||||||||||    
T  25513242 ccacccttacagctgccctctcttaagaaatttgaaatctctgggtgtaagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 25513341  T
Q  133 atatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |||||  | | ||||  || ||||||| ||||||||||| |||||||||||||||||||||||||    
T  25513342 atattgagatatatgatacttccatagaagaattgccatcttcatttcaaaatttcagtgaactt 25513406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 27425404 - 27425216
Alignment:
Q  18 aagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggt 117  Q
    ||||||| ||||||||||||| ||||||   |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |  | | |     
T  27425404 aagctcgagagttttccacccttacagtctccctctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattattatgcaaga 27425305  T
Q  118 tgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttgctcactta 206  Q
    ||||||||||||||  ||| | |||| | |  || |||||||||||||| |||||||| ||||||||| | |||||||||  |||||||    
T  27425304 tgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaaatcttagtgaacttcgtcactta 27425216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 26145364 - 26145528
Alignment:
Q  33 ccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaag 132  Q
    |||||| ||||| || |||||||||||||||| ||| |||||  |||| |||||||||||| ||||||||||||| |  ||| | |||||||||||||||    
T  26145364 ccacccttacagctgccctctcttaagaaatttgaaatctctggttgtgagagtctcaagaattttccagaattattatgtaagatgacaaatataaaag 26145463  T
Q  133 atatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |||||  | | ||||  || ||||||| |||||||| || |||||||||||||||||||||||||    
T  26145464 atattgagatatatgatacttccatagaagaattgcgatattcatttcaaaatttcagtgaactt 26145528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 26979750 - 26979941
Alignment:
Q  6 aagggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaat 105  Q
    ||||||||| ||||||||| ||||||||||||| |||| ||| ||||||||||| ||||||||||||||   ||| | |||||||| |||||||||||||    
T  26979750 aagggttgcctcaagctcgagagttttccacccttacatttgccctctcttaaggaattggaactctctgagtgtgatagtctcaaaagttttccagaat 26979849  T
Q  106 tagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    || |  ||    ||| |||||||||| | ||| |||| | |   || |||||||||||||||||||||||||||||| || |||||||||||    
T  26979850 tattatgtcaaatgaaaaatataaaaaagattgggttctctaatacttccataggagaattgccattttcatttcaatatctcagtgaactt 26979941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 26826168 - 26826354
Alignment:
Q  11 ttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagtt 110  Q
    ||||| |||||||| ||||||||||||| ||| |||| |||| |||||| | ||| ||||||||   |||||||||||||||||||||||| ||||| |     
T  26826168 ttgcagcaagctcgagagttttccacccttacggttgccctcccttaaggatttgaaactctctggctgtaagagtctcaagagttttccaaaattatta 26826267  T
Q  111 ggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
     ||  | ||||||| |||||||  ||||| |||||||  || ||||||||||||||||||| |||||||| |||| ||| |||||||    
T  26826268 tgtgagatgacaaaaataaaaggaatttgtttgtatgatacttccataggagaattgccatcttcatttcgaaatctcaatgaactt 26826354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 26961451 - 26961643
Alignment:
Q  6 aagggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaat 105  Q
    ||||||||| ||||||||| ||||||||||||| |||| ||| ||||||||||| |||||||||||||||  ||| | |||||||| |||||||||||||    
T  26961451 aagggttgcctcaagctcgagagttttccacccttacatttgccctctcttaaggaattggaactctctaagtgtgatagtctcaaaagttttccagaat 26961550  T
Q  106 tagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttg 198  Q
    || |  |     |||||||||||||||| |||    | | ||  || |||||||||||||| ||||||||||||||| || ||||||||||||    
T  26961551 tattatgccaaatgacaaatataaaagagattaatctttgtgatacttccataggagaatttccattttcatttcaatatctcagtgaacttg 26961643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 26952137 - 26952308
Alignment:
Q  26 gagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaat 125  Q
    |||||||||| || |||||||| |||||||| || ||||| ||||||||   ||| ||||||||||||| |||||||||||| |  | | | ||||||||    
T  26952137 gagttttccatccttacagttgccctctcttgaggaattgaaactctctgagtgtgagagtctcaagagctttccagaattattatgcaagatgacaaat 26952236  T
Q  126 ataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |||||||| |||  | | ||||  || |||||||||||||||||||||||||||  |||| |||||||||||    
T  26952237 ataaaagagattacgatatatgaaacatccataggagaattgccattttcatttggaaatctcagtgaactt 26952308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 25076212 - 25076382
Alignment:
Q  27 agttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaata 126  Q
    |||||||||||| ||| | || ||||||||||| ||||| |||| |||   |||  ||||||||||||||||||||||||| |  | | | ||||||||     
T  25076212 agttttccacccttacggctgccctctcttaaggaattgaaactttctgagtgttggagtctcaagagttttccagaattattgtgcaagatgacaaatt 25076311  T
Q  127 taaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    | |||  ||||| |||| | || || ||||||||||||||||||||||||||||||||| |||||||||||    
T  25076312 tgaaaagtattttgttggacggtacttccataggagaattgccattttcatttcaaaatctcagtgaactt 25076382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 26863953 - 26864139
Alignment:
Q  11 ttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagtt 110  Q
    ||||| |||||||| ||||||||||||| |||| ||| | |||||||||| ||||||||||| |   |||   || ||||||||||||||||||||| |     
T  26863953 ttgcagcaagctcgagagttttccacccttacaattggcatctcttaagatattggaactctatgagtgtttcagactcaagagttttccagaattatta 26864052  T
Q  111 ggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
     | | | ||| |||||||||||| ||  |||||| ||  || |||||| |||||||| ||||||||||||||||| |||||||||||    
T  26864053 tgcaagatgataaatataaaagagatccggttgtctgaaacttccataagagaattgtcattttcatttcaaaatctcagtgaactt 26864139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 27662991 - 27662845
Alignment:
Q  51 tctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatggga 150  Q
    |||||||||||||||||||||  | |||||| ||||||||||||||||||||||||| |  | | | || ||||||||||||| |||||||| | ||  |    
T  27662991 tctcttaagaaattggaactccatttttgtaggagtctcaagagttttccagaattattatgcaagatgtcaaatataaaagagatttggttatgtgata 27662892  T
Q  151 cctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    | ||||||| |||| |||||||||||||| ||||| ||| |||||||    
T  27662891 cttccatagaagaaatgccattttcatttaaaaatctcaatgaactt 27662845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 27602538 - 27602354
Alignment:
Q  11 ttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagtt 110  Q
    |||||||||||||  |||| |||||||  ||||  || ||| |||||||| |||||||||| | || |||||||||||||||||||||||||||||| |     
T  27602538 ttgcatcaagctccagagtgttccacctttacaactgccctgtcttaagagattggaactcgccatgtgtaagagtctcaagagttttccagaattatta 27602439  T
Q  111 ggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttg 198  Q
     | | | |||||||| ||||||||||||||||| |||  || | |||    ||||| ||||||||| |||||||| ||||||||||||    
T  27602438 tgcaagatgacaaatttaaaagatatttggttgaatgaaacttgcat---ggaatttccattttcaattcaaaatctcagtgaacttg 27602354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 25547335 - 25547499
Alignment:
Q  33 ccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaag 132  Q
    |||||| ||||| || |||||||||||||||| ||| |||||  |||| |||||||||||| ||||||||||||| |  | | | |||||||||||||||    
T  25547335 ccacccttacagctgccctctcttaagaaatttgaaatctcttattgtgagagtctcaagaattttccagaattattatgcaagatgacaaatataaaag 25547434  T
Q  133 atatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    ||||   | | ||||  || || |||| ||||||||| | |||||||||||||||||||||||||    
T  25547435 atatcaagatatatgatacttctatagaagaattgccgtattcatttcaaaatttcagtgaactt 25547499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 25582074 - 25582238
Alignment:
Q  33 ccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaag 132  Q
    |||||| ||||| || |||||||||||||||| ||| ||||||  ||| |||||||||||| ||||||||||||| |  | | | ||| |||||||||||    
T  25582074 ccacccttacagctgccctctcttaagaaatttgaaatctctaagtgtgagagtctcaagaattttccagaattattatgcaagatgagaaatataaaag 25582173  T
Q  133 atatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    ||||   | | ||||  |  ||||||| ||||||||||| |||||||||||||||||||||||||    
T  25582174 atatcaagatatatgccatttccatagaagaattgccatattcatttcaaaatttcagtgaactt 25582238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 26058274 - 26058438
Alignment:
Q  33 ccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaag 132  Q
    |||||| ||||| || |||||||||||||||| ||| || ||  ||||  ||||||||||| ||||||||||||| |  ||  | |||||||||||||||    
T  26058274 ccacccttacagctgccctctcttaagaaatttgaaatcactgattgtgtgagtctcaagaattttccagaattattatgtgagatgacaaatataaaag 26058373  T
Q  133 atatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |||||  | | ||||  || ||||||| ||||||||||| ||||||||||||||||||| |||||    
T  26058374 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtaaactt 26058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 26078244 - 26078408
Alignment:
Q  33 ccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaag 132  Q
    |||||| ||||| || |||||||||||||||| ||| || ||  ||||  ||||||||||| ||||||||||||| |  ||  | |||||||||||||||    
T  26078244 ccacccttacagctgccctctcttaagaaatttgaaatcactgattgtgtgagtctcaagaattttccagaattattatgtgagatgacaaatataaaag 26078343  T
Q  133 atatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |||||  | | ||||  || ||||||| ||||||||||| ||||||||||||||||||| |||||    
T  26078344 atattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtaaactt 26078408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 31286919 - 31287107
Alignment:
Q  9 ggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattag 108  Q
    ||||||| |||||||  | ||||||||||| ||   ||| | ||||||||| |||||||||||||| |||||  ||||||||| |||||||||||||||     
T  31286919 ggttgcagcaagctcaagcgttttccacccttaggtttggcatctcttaaggaattggaactctctttttgtgtgagtctcaatagttttccagaattat 31287018  T
Q  109 ttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |  | | | ||||||||||||||  ||||| |||   |   || ||||||||||||||||||| ||||||||||||| |||||||||||    
T  31287019 tatgcaagatgacaaatataaaacgtattttgtttgttaatacttccataggagaattgccatcttcatttcaaaatctcagtgaactt 31287107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 26851011 - 26851209
Alignment:
Q  8 gggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaatta 107  Q
    |||||||| |||||| | ||||||||||||| |||| ||| ||||||||||| |||||  | | ||||  |||  ||||||||||| |||||||||||||    
T  26851011 gggttgcaacaagcttgagagttttccacccttacaattgccctctcttaaggaattgatattatctaggtgttcgagtctcaagaattttccagaatta 26851110  T
Q  108 gttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttgctcactta 206  Q
     |  | | | ||||||||||| |||| |||  |||  || | || ||||||||||||||||||| ||||||| ||||| |||||||||||  |||||||    
T  26851111 ttatgcaagatgacaaatatagaagagattgagttacatcgtacttccataggagaattgccatcttcatttaaaaatctcagtgaacttcgtcactta 26851209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 27529083 - 27528994
Alignment:
Q  18 aagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaatta 107  Q
    ||||||| ||||||||||||| ||||||   |||||||| ||||  |||||||||||| |||||||||||||||||||||||||||||||    
T  27529083 aagctcgagagttttccacccttacagtctccctctcttcagaatctggaactctctaattgtaagagtctcaagagttttccagaatta 27528994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 26648826 - 26649013
Alignment:
Q  10 gttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagt 109  Q
    |||||| |||||||  | ||||||||||| ||  |||||| ||||||||| |||||||||||  |  |||| ||||||| |||| ||||||||||||| |    
T  26648826 gttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaactcagtggttgtgagagtctaaagaattttccagaattatt 26648925  T
Q  110 tggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
      | |   ||| |||||||||| ||||||  |||| | | || || |||||||||||||||| ||||||||| ||| |||||||||||    
T  26648926 atgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttcataatctcagtgaactt 26649013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 26754794 - 26754981
Alignment:
Q  10 gttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagt 109  Q
    |||||| |||||||  | ||||||||||| ||  |||||| ||||||||| |||||||||||  |  |||| ||||||| |||| ||||||||||||| |    
T  26754794 gttgcagcaagctcaagcgttttccacccttagggttgacatctcttaagcaattggaactcagtggttgtgagagtctaaagaattttccagaattatt 26754893  T
Q  110 tggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
      | |   ||| |||||||||| ||||||  |||| | | || || |||||||||||||||| ||||||||| ||| |||||||||||    
T  26754894 atgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttcataatctcagtgaactt 26754981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 27716243 - 27716129
Alignment:
Q  83 gagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaa 182  Q
    ||||||||||||||||||||||||| |  | | | ||||||||||| |  |||||||||||| |   || |||||||||||| |||||||||||||||||    
T  27716243 gagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaa 27716144  T
Q  183 aatttcagtgaactt 197  Q
    ||| | |||||||||    
T  27716143 aatcttagtgaactt 27716129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 26886452 - 26886640
Alignment:
Q  12 tgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttg 111  Q
    ||||||||||| | ||||||||||||| ||||| || ||||||| ||| |||| |||||||||  ||||| |||||||||||  || ||||||||| |      
T  26886452 tgcatcaagcttgagagttttccacccttacagctgccctctctcaaggaatttgaactctcttattgtaggagtctcaagaaattcccagaattattat 26886551  T
Q  112 gtaggttgacaaatataaaagatatttggtt---gtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    | | | |||||||| ||||||| |||  |||     ||   || |||||||||| |||||||||||||||| ||||| |||||||||||    
T  26886552 gcaagatgacaaatttaaaagagattgcgttacataataacacttccataggaggattgccattttcatttgaaaatctcagtgaactt 26886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 28794752 - 28794941
Alignment:
Q  9 ggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattag 108  Q
    ||||||| ||||||||   ||||||||||  ||  |||| | ||||||||  ||||||| |||||| ||||| |||||||||||| ||||||| |||||     
T  28794752 ggttgcagcaagctcgaacgttttccacctttagggttggcatctcttaacgaattggatctctctttttgtgagagtctcaagaattttccaaaattat 28794851  T
Q  109 ttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttg 198  Q
    |  | | | |||||||||| ||||| ||| |  | | |   || ||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  28794852 tatgcaagatgacaaatatcaaagagattggtatatcttatacttccataggagaattgccatcttcatttcaaaatctcaatgaacttg 28794941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 25485410 - 25485509
Alignment:
Q  95 ttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaa 194  Q
    ||||||||||||| |  ||| | || |||||||||||||||||  | | ||||  || ||||||| ||||||||||| ||||||||||||||||||||||    
T  25485410 ttttccagaattattatgtaagatgtcaaatataaaagatattaagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtgaa 25485509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 28788802 - 28788916
Alignment:
Q  83 gagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaa 182  Q
    ||||||||||||||||||| ||||| |  | | | |||||||||| ||| | ||||||||| |    || |||||| |||||||||||| ||||||||||    
T  28788802 gagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaa 28788901  T
Q  183 aatttcagtgaactt 197  Q
    ||| |||||||||||    
T  28788902 aatctcagtgaactt 28788916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 27675250 - 27675205
Alignment:
Q  153 tccataggagaattgccattttcatttcaaaatttcagtgaacttg 198  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  27675250 tccataggagaattgccatcttcatttcaaaatctcagtgaacttg 27675205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 27703966 - 27703845
Alignment:
Q  77 ttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttca 176  Q
    |||| |||||||| | ||||||||||||||| |  | | | ||||||||||| |  ||||||||||| |    || || ||||||||| |||||||||||    
T  27703966 ttgtgagagtctcgatagttttccagaattattatgcaagatgacaaatatagataatatttggttgcagcatacttctataggagaactgccattttca 27703867  T
Q  177 tttcaaaatttcagtgaacttg 198  Q
    ||||||||| ||||||||||||    
T  27703866 tttcaaaatctcagtgaacttg 27703845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 27681471 - 27681515
Alignment:
Q  153 tccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    |||||||||||| |||||||||||||||||||| |||||||||||    
T  27681471 tccataggagaactgccattttcatttcaaaatctcagtgaactt 27681515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 27608895 - 27608749
Alignment:
Q  51 tctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatggga 150  Q
    ||||||||||||||| | |||  |  |||| |||||||| | ||||||||||||||| |  | | | ||||||| ||| |  |||||| ||||  | | |    
T  27608895 tctcttaagaaattgaatctcagtggttgtgagagtctcgatagttttccagaattattatgcaagatgacaaagatagacaatattttgttgattagta 27608796  T
Q  151 cctccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    | |||||| ||||| |||||||||||||||||||| |||||||||||    
T  27608795 cttccataagagaactgccattttcatttcaaaatctcagtgaactt 27608749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 27590656 - 27590611
Alignment:
Q  153 tccataggagaattgccattttcatttcaaaatttcagtgaacttg 198  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||||    
T  27590656 tccatacgagaattgccatcttcatttcaaaatctcagtgaacttg 27590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 27696264 - 27696219
Alignment:
Q  153 tccataggagaattgccattttcatttcaaaatttcagtgaacttg 198  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||    
T  27696264 tccataggaaaactgccattttcatttcaaaatctcagtgaacttg 27696219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 26637916 - 26637988
Alignment:
Q  26 gagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagtttt 98  Q
    ||||||||||||| ||| |||| ||||||||||| || || ||||| ||  ||||| ||||||||||||||||    
T  26637916 gagttttccacccttacggttgccctctcttaagcaagtgaaactcgcttattgtaggagtctcaagagtttt 26637988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 26743882 - 26743954
Alignment:
Q  26 gagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagtttt 98  Q
    ||||||||||||| ||| |||| ||||||||||| || || ||||| ||  ||||| ||||||||||||||||    
T  26743882 gagttttccacccttacggttgccctctcttaagcaagtgaaactcgcttattgtaggagtctcaagagtttt 26743954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 26939378 - 26939471
Alignment:
Q  10 gttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccaga 103  Q
    ||||| ||||||||  ||||||||||||| |||||||||| |||||||| |  ||| |  | ||   |||||||||||||| ||||||||||||    
T  26939378 gttgcgtcaagctcacgagttttccacccttacagttgacttctcttaaaattttgaatttatcacattgtaagagtctcaggagttttccaga 26939471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 26805004 - 26805048
Alignment:
Q  154 ccataggagaattgccattttcatttcaaaatttcagtgaacttg 198  Q
    ||||||||||||||| || ||||||||||||| | ||||||||||    
T  26805004 ccataggagaattgctatcttcatttcaaaatctgagtgaacttg 26805048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 18076151 - 18076339
Alignment:
Q  18 aagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggt 117  Q
    ||||||| ||||||||||||| ||||||   |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |  | | |     
T  18076151 aagctcgagagttttccacccttacagtctccctctcttcagaatttggaactctctaattgtaagagtctcaagagttttccagaattattatgcaaga 18076250  T
Q  118 tgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtgaacttgctcactta 206  Q
    ||||||||||||||  ||| | |||| | |  || |||||||||||||| |||||||| ||||||||| | |||||||||  |||||||    
T  18076251 tgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaaatcttagtgaacttcgtcactta 18076339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 18677410 - 18677232
Alignment:
Q  12 tgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttg 111  Q
    |||| |||||| | || |||||||||| ||  | || ||||||| ||| ||||||| |||||| |||||||||| ||||||||||||||||||||| |      
T  18677410 tgcaccaagcttgagaattttccacccttatggctgccctctctgaaggaattggacctctctttttgtaagagactcaagagttttccagaattattat 18677311  T
Q  112 gtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcag 190  Q
    ||| | ||||||||| |||||| ||| |  ||| |   || |||| |  ||||||||||||||||||||||||| ||||    
T  18677310 gtaagatgacaaatacaaaagagattggaatgtgtataacttccacaacagaattgccattttcatttcaaaatctcag 18677232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 18721924 - 18721746
Alignment:
Q  12 tgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttg 111  Q
    ||||||||||| | ||||||||||||| ||  | || |||||||| || ||||||| |||||| ||||| |||| |||||||||||||||||| || |      
T  18721924 tgcatcaagcttgagagttttccacccttatggctgccctctcttgaggaattggacctctctttttgtgagagactcaagagttttccagaactattat 18721825  T
Q  112 gtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcag 190  Q
    ||| | ||||||||| |||||  ||| |  ||| |   || |||| | |||||||||||||||||||||||||| ||||    
T  18721824 gtaagatgacaaatacaaaagcgattggaatgtgtataacttccacaagagaattgccattttcatttcaaaatctcag 18721746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 18729346 - 18729176
Alignment:
Q  12 tgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttg 111  Q
    ||||||||||| | || |||||||||| | | | || ||||||||||| ||||||| ||| ||  ||||||||| ||||||||||||||||||||| |      
T  18729346 tgcatcaagcttgagaattttccacccttgcggctgccctctcttaaggaattggacctcacttattgtaagagactcaagagttttccagaattattat 18729247  T
Q  112 gtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaa 182  Q
    ||| | ||||||||| |||||| ||| |  ||| |   || |||| | |||||||||||||||||||||||    
T  18729246 gtaagatgacaaatacaaaagagattggaatgtgtaaaacttccacaagagaattgccattttcatttcaa 18729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 18697253 - 18697075
Alignment:
Q  12 tgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttg 111  Q
    |||| |||||| | ||||||||||||| ||  | || ||||||| ||| |||||||  |||||  ||||| ||| ||||||||||||||||||||| |      
T  18697253 tgcagcaagcttgagagttttccacccttatggctgccctctctgaaggaattggacatctcttattgtaggagactcaagagttttccagaattattat 18697154  T
Q  112 gtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcag 190  Q
    ||| | ||||||||| |||||| ||| |  ||| |   || |||| | |||||||||||||||||||||||||| ||||    
T  18697153 gtaagatgacaaatacaaaagagattggaatgtgtacaacttccacaagagaattgccattttcatttcaaaatctcag 18697075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 18687451 - 18687287
Alignment:
Q  26 gagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaat 125  Q
    ||||||||||||| ||  | || ||||||| ||| |||||||  |||||  ||||| ||| ||||||||||||||||||||| |  ||| | ||||||||    
T  18687451 gagttttccacccttatggctgccctctctgaaggaattggacatctcttattgtaggagactcaagagttttccagaattattatgtaagatgacaaat 18687352  T
Q  126 ataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcag 190  Q
    | |||||| ||| |  ||| |   || |||| | |||||||||||||||||||||||||| ||||    
T  18687351 acaaaagagattggaatgtgtataacttccacaagagaattgccattttcatttcaaaatctcag 18687287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 18653314 - 18653155
Alignment:
Q  26 gagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaat 125  Q
    ||||||||||||| ||  | || ||||||||||| |||||||  |||||  ||||||||| |||||| ||||||||||| || |  ||| | ||||||||    
T  18653314 gagttttccacccttatggctgccctctcttaaggaattggacgtctcttattgtaagagactcaagtgttttccagaactattatgtaagatgacaaat 18653215  T
Q  126 ataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaat 185  Q
    | |||||| ||| |  ||| |   || |||| | ||||||||||||||||||||||||||    
T  18653214 acaaaagagattggaatgtgtataacttccacaagagaattgccattttcatttcaaaat 18653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 18682428 - 18682391
Alignment:
Q  153 tccataggagaattgccattttcatttcaaaatttcag 190  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  18682428 tccataagagaattgccattttcatttcaaaatctcag 18682391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 18726704 - 18726667
Alignment:
Q  153 tccataggagaattgccattttcatttcaaaatttcag 190  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  18726704 tccataagagaattgccattttcatttcaaaatctcag 18726667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 17991038 - 17990853
Alignment:
Q  7 agggttgcatcaagctcgtgagttttccacccgtacagttgacctctcttaagaaattggaactctctatttgtaagagtctcaagagttttccagaatt 106  Q
    ||||||| | |||||||| ||||||||| ||| |||||||| | |||||||||||||||||||| ||||  |||| ||  || |||||||||||||||||    
T  17991038 agggttgtagcaagctcgagagttttcctcccttacagttggcatctcttaagaaattggaactatctagatgtaggaacctaaagagttttccagaatt 17990939  T
Q  107 agttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaaaatttcagtg 192  Q
    | |  | | | ||||||| ||| || |||||||||||   |  |  ||||||||||||||||||||||||||||||||| ||||||    
T  17990938 attatgcaagatgacaaagatagaacatatttggttggcagatagttccataggagaattgccattttcatttcaaaatctcagtg 17990853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 15702 - 15816
Alignment:
Q  83 gagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaa 182  Q
    ||||||||||||||||||||||||| |  | | | ||||||||||| |  |||||||||||| |   || |||||||||||| |||||||||||||||||    
T  15702 gagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaa 15801  T
Q  183 aatttcagtgaactt 197  Q
    ||| | |||||||||    
T  15802 aatcttagtgaactt 15816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 11397 - 11283
Alignment:
Q  83 gagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttcatttcaa 182  Q
    ||||||||||||||||||| ||||| |  | | | |||||||||| ||| | ||||||||| |    || |||||| |||||||||||| ||||||||||    
T  11397 gagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaa 11298  T
Q  183 aatttcagtgaactt 197  Q
    ||| |||||||||||    
T  11297 aatctcagtgaactt 11283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 2440 - 2320
Alignment:
Q  77 ttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttca 176  Q
    |||| |||||||||||||||||||| ||||| |  | | | |||||||||| |||   ||||||||| |    || |||||| |||||||||||| ||||    
T  2440 ttgtgagagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaatgatttggttgcagaaaacttccataagagaattgccatcttca 2341  T
Q  177 tttcaaaatttcagtgaactt 197  Q
    ||||||||| ||| |||||||    
T  2340 tttcaaaatctcaatgaactt 2320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 22023667 - 22023808
Alignment:
Q  54 cttaagaaattggaactctctatttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacct 153  Q
    |||||||||||||||||||| |  |||| |||||||  |||||||||| ||||| |  | | | ||| ||||||| || |||||| |||||||   || |    
T  22023667 cttaagaaattggaactctccaagtgtaggagtctc--gagttttccaaaattattatgcaagatgaaaaatatagaatatatttcgttgtataatactt 22023764  T
Q  154 ccataggagaattgccattttcatttcaaaatttcagtgaactt 197  Q
    ||||| |||||||||||| ||| ||||||||| ||||| |||||    
T  22023765 ccataagagaattgccatcttcttttcaaaatctcagtaaactt 22023808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 9946 - 10066
Alignment:
Q  77 ttgtaagagtctcaagagttttccagaattagttggtaggttgacaaatataaaagatatttggttgtatgggacctccataggagaattgccattttca 176  Q
    |||| |||||||||||||||||||| ||||| |  | | | |||||||||| |||   ||||||||| |    || |||||| |||||||||||| ||||    
T  9946 ttgtgagagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaacgatttggttgcagaaaacttccataagagaattgccatcttca 10045  T
Q  177 tttcaaaatttcagtgaactt 197  Q
    ||||||||| ||| |||||||    
T  10046 tttcaaaatctcaatgaactt 10066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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