View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_66 (Length: 238)

Name: NF11780_low_66
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_66
NF11780_low_66
[»] chr2 (7 HSPs)
chr2 (10-223)||(2327254-2327467)
chr2 (10-223)||(2294086-2294299)
chr2 (10-223)||(2321401-2321614)
chr2 (14-223)||(2310417-2310626)
chr2 (10-223)||(2351275-2351488)
chr2 (10-223)||(2303699-2303912)
chr2 (10-223)||(2330969-2331182)
[»] chr8 (2 HSPs)
chr8 (14-223)||(41127281-41127493)
chr8 (80-196)||(26494893-26495009)
[»] chr4 (1 HSPs)
chr4 (166-213)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (81-202)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 2327467 - 2327254
Alignment:
Q  10 gcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagc 109  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2327467 gcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagc 2327368  T
Q  110 cacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2327367 cacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaata 2327268  T
Q  210 tcaaaagtctcatc 223  Q
    ||||||||||||||    
T  2327267 tcaaaagtctcatc 2327254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 2294299 - 2294086
Alignment:
Q  10 gcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagc 109  Q
    |||||||||||| |||||||| |||||||||   | |||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  2294299 gcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagc 2294200  T
Q  110 cacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaata 209  Q
    ||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||  |||||||||||||||||||||| ||||||||||| ||||||||     
T  2294199 cacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatg 2294100  T
Q  210 tcaaaagtctcatc 223  Q
    ||||||||||||||    
T  2294099 tcaaaagtctcatc 2294086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 2321614 - 2321401
Alignment:
Q  10 gcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagc 109  Q
    |||||||||||| ||||||||  |||||||||  ||||||||||||||| |||||||||||||| |||| || ||||| ||||||||||||||| |||||    
T  2321614 gcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagc 2321515  T
Q  110 cacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaata 209  Q
    ||||||||||||||||||||| ||||||||||||  ||| ||||||||||| ||  |||||||||||||||||||||| ||||||||||||||| |||||    
T  2321514 cacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataata 2321415  T
Q  210 tcaaaagtctcatc 223  Q
    ||||||||||||||    
T  2321414 tcaaaagtctcatc 2321401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 2310626 - 2310417
Alignment:
Q  14 tggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccaca 113  Q
    |||||||| ||||||||  ||||||||   | |||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  2310626 tggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccaca 2310527  T
Q  114 aaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaa 213  Q
    ||||||||||||||||| ||||||||||||  ||| ||||||||||||||  |||||||||||||||||||||| ||||||||||| |||| |||  |||    
T  2310526 aaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctggaatgacaa 2310427  T
Q  214 aagtctcatc 223  Q
    ||||||||||    
T  2310426 aagtctcatc 2310417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 2351488 - 2351275
Alignment:
Q  10 gcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagc 109  Q
    |||||||||||| ||||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  2351488 gcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattagc 2351389  T
Q  110 cacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaata 209  Q
    ||||||||||||||| || || ||||||||||||||||| ||||| ||||| ||| || | ||||| ||||||||||| |||||||||||||| |||||     
T  2351388 cacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaatg 2351289  T
Q  210 tcaaaagtctcatc 223  Q
    ||||| || |||||    
T  2351288 tcaaatgtttcatc 2351275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 2303912 - 2303699
Alignment:
Q  10 gcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagc 109  Q
    |||||||||||| ||||||||   |||||||   ||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  2303912 gcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaattagc 2303813  T
Q  110 cacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaata 209  Q
    |||||||||||| |||||||| ||||||||||||  | | ||||||||||| || |||||| |||||||||||||||| ||||| ||||||||||||||     
T  2303812 cacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctccttactccctgtaatg 2303713  T
Q  210 tcaaaagtctcatc 223  Q
    |||||| |||||||    
T  2303712 tcaaaattctcatc 2303699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 2331182 - 2330969
Alignment:
Q  10 gcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagc 109  Q
    |||||||||||| ||| ||||  ||||||||   ||| || |||||||| ||  | |||||||| |||||||||||||||||||||||||||||||||||    
T  2331182 gcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaattccaaaccaaattagc 2331083  T
Q  110 cacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaata 209  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||| ||  |||||||||| ||||||||||| ||||||||||| ||||||||     
T  2331082 cacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctctttacttcctgtaatg 2330983  T
Q  210 tcaaaagtctcatc 223  Q
    ||||||||||||||    
T  2330982 tcaaaagtctcatc 2330969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 41127493 - 41127281
Alignment:
Q  14 tggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggcca---ccctctggaaccttccaatcgaaattccaaaccaaattagcc 110  Q
    |||||||| ||| |||||||||||||||  ||||||||||||||| ||||  |||   |||||| ||| ||||||||  |||||||| ||||||||||||    
T  41127493 tggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaattaaaattccagaccaaattagcc 41127394  T
Q  111 acaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatat 210  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||  || ||||||||||||||||||| ||||||||| |||| |||||||    
T  41127393 acaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatctctttagtcccggtaatat 41127294  T
Q  211 caaaagtctcatc 223  Q
    |||||| ||||||    
T  41127293 caaaagcctcatc 41127281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
Q  80 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggc 179  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| |||||||| |  || || |||||  | |||||||| || ||  | ||||||||||||    
T  26495009 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 26494910  T
Q  180 atcatcttgatctcttt 196  Q
    |||||||| ||||||||    
T  26494909 atcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 55017117 - 55017070
Alignment:
Q  166 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaa 213  Q
    |||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  55017117 cagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 15176287 - 15176408
Alignment:
Q  81 ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggca 180  Q
    ||||| || |||||| |||| ||||| || ||||| |||||||| || |  || ||||||  ||| || ||||| ||||| ||  | |||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  181 tcatcttgatctctttactccc 202  Q
    ||||||| ||||||||||||||    
T  15176387 tcatctttatctctttactccc 15176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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