View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_68 (Length: 213)
Name: NF11780_low_68
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 35290747 - 35290571
Alignment:
| Q |
19 |
atgaacctagaatgaagagacaatagttataaattagatccnnnnnnnnnnnnnnntacattgtcaaactttgtaaaatattaagtgtgaaacctacctg |
118 |
Q |
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| T |
35290747 |
atgaacctagaatgaagagacaatagttataaattagatccaaaaaaaaaaaaaa-tacattgtcaaactttgtaaaatattaagtgtgaaacctacctg |
35290649 |
T |
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| Q |
119 |
cattagattgttagctaagcaaagcttctgcatcttgtggacatattcatagattgtttgttgaagggcatccctttt |
196 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35290648 |
cattagattgttagctaagcatagcttctgcatcttgtggacatattcatagattgtttgttgaagggcatccctttt |
35290571 |
T |
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