View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_69 (Length: 205)
Name: NF11780_low_69
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 4710841 - 4711030
Alignment:
| Q |
1 |
aatctgcagcttgtgtcttaaggctactgaaaacgagtcaacacattatgtttgaatgtgggtatgctagatctatttggaattggtttgctaaatcatt |
100 |
Q |
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| T |
4710841 |
aatctgcagcttgtgtcttaaggctactgaaaacgagtcaacacattatgtttgaatgtgggtatgctagatctatttggaattggtttgctaaatcatt |
4710940 |
T |
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| Q |
101 |
atgaccatttcaaagtagtctatttcatgacaagtctctagtgttgtttcacacaaatttcccttctacttcttaatgtaatgtatatat |
190 |
Q |
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| T |
4710941 |
atgaccatttcaaagtagtctatttcatgacaagtctctagtgttgtttcacacaaatttcccttctacttcttaatgtaatgtatatat |
4711030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 4844863 - 4844953
Alignment:
| Q |
100 |
tatgaccatttcaaagtagtctatttcatgacaagtctctagtgttgttt-cacacaaatttcccttctacttcttaatgtaatgtatatat |
190 |
Q |
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| T |
4844863 |
tatgaccatttcaaagtagtctatttcatgacaaag-tctagtgttgttttcacacaaatttcccttctacttctcaatctaatgtatatat |
4844953 |
T |
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