View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_7 (Length: 726)

Name: NF11780_low_7
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_7
NF11780_low_7
[»] chr3 (13 HSPs)
chr3 (44-715)||(24684049-24684722)
chr3 (18-676)||(24655792-24656454)
chr3 (504-676)||(24672655-24672827)
chr3 (519-676)||(24634193-24634350)
chr3 (507-676)||(24679852-24680021)
chr3 (167-286)||(24678730-24678849)
chr3 (193-277)||(24646451-24646535)
chr3 (172-252)||(18158148-18158228)
chr3 (445-669)||(24676738-24676959)
chr3 (192-240)||(24714698-24714746)
chr3 (586-676)||(24687531-24687621)
chr3 (172-240)||(24692607-24692674)
chr3 (199-252)||(24720199-24720254)
[»] chr7 (1 HSPs)
chr7 (172-252)||(22014230-22014310)
[»] chr5 (1 HSPs)
chr5 (172-252)||(15282536-15282616)
[»] chr2 (1 HSPs)
chr2 (172-252)||(24224034-24224114)


Alignment Details
Target: chr3 (Bit Score: 639; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 44 - 715
Target Start/End: Original strand, 24684049 - 24684722
Alignment:
Q  44 actgctatgtgacaatgctttgtactaaattatgtaccacggaacaataacagtttgttaaaatttagctacactatagggatatagcaccgctattaca 143  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24684049 actgctatgtgacaatactttgtactaaattatgtaccacggaacaataacagtttgttaaaatttagctacactatagggatatagcaccgctattaca 24684148  T
Q  144 caacactgattaaaaagaagactat--ttgacattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaac 241  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24684149 caacactgattaaaaagaagactatatttgacattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaac 24684248  T
Q  242 aaagcagaattgctttacatgcttagagaaagtaattaaaatttagctgacatgagaaagtaaaataccctgtattcatttattcaattttatctcctac 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24684249 aaagcagaattgctttacatgcttagagaaagtaattaaaatttagctgacatgagaaagtaaaataccccgtattcatttattcaattttatctcctac 24684348  T
Q  342 ctttacttggaagaacaattacatatatacagcaagcaaaataagaagaaacaaaaatactaaatatgaaccaaaccaagccgcatgatgtctgcattgc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24684349 ctttacttggaagaacaattacatatatacagcaagcaaaataagaagaaacaaaaatactaaatatgaaccaaaccaagccgcatgatgtctgcattgc 24684448  T
Q  442 agtttacaaatcttacgcctgagatgtgtcctgtggttccggttttggaggctgaggagggtttgaatgtgtggtaaggaagagcttaggaatattatag 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24684449 agtttacaaatcttacgcctgagatgtgtcctgtggttccggttttggaggctgaggagcgtttgaatgtgtggtaaggaagagcttaggaatattatag 24684548  T
Q  542 atgcagttgaagaaacaggatgatgtagtaagtaaaagaaagaggttgatgatacaccaattccataactcatggaggagaatccaaagaagtgtctcac 641  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24684549 atgcagttgaagaaacaggatgatgtagcaagtaaaagaaagaggttgatgatacaccaattccataactcatggaggagaatccaaagaagtgtctcac 24684648  T
Q  642 gtccaactaaactggaaaagtggaatatgatcataaattacaagaaactataacttgattaagttctctgcttc 715  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24684649 gtccaactaaaccggaaaagtggaatatgatcataaattaaaagaaactataacttgattaagttctctgcttc 24684722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Original strand, 24655792 - 24656454
Alignment:
Q  18 attttcctatgctacagttttatagcactgctatgtgacaatgctttgtactaaattatgtaccacggaacaataacagtttgttaaaatttagctacac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24655792 attttcctatgctacagttttatagcactgctatgtgacaatgctttgtactaaattatgtaccacggaacaataacagtttgttaaaattcagctacac 24655891  T
Q  118 tatagggatatagcaccgctattacacaacactgattaaaaagaagactatttgacattgattttccatatatcaataaactattgaaacatacacagca 217  Q
    ||||||||||||||||  | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  24655892 tatagggatatagcacttccattagacaacactgattaaaaagcagactatttgacattgattttccatatatcaataaactattgaaacatacacatcg 24655991  T
Q  218 ttctgctcaattaataaggaaaacaaagcagaattgctttacatgcttagagaaagtaattaaaatttagctgacatgagaaagtaaaataccctgtatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  24655992 ttctgctcaattaataaggaaaacaaagcagaattgctttacatgcttaaagaaagtaattaaaatttagctgacataagaaattaaaataccctgtatt 24656091  T
Q  318 catttattcaattttatctcctacctttacttggaagaacaattacatatatacagcaagcaaaataagaagaaacaaaaatactaaatatgaaccaaac 417  Q
    |||||||||||||||| || ||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||| |||||    
T  24656092 catttattcaattttaccttctagcattacttggtagaacaattacatatatacagcaagcaaaataaaaagaaactaaactactaaatacgaaacaaac 24656191  T
Q  418 caagccgcatgatgtctgcattgcagtt----tacaaatcttacgcctgagatgtgtcctgtggttccggttttggaggctgaggagggtttgaatgtgt 513  Q
    |||||| |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||     
T  24656192 caagccacatgatgtctgcattgcagtttacatacaaatcttacgcctgagatgtgtcctgtggttccggatttggaggctgaggagtgtttgaatgtgc 24656291  T
Q  514 ggtaaggaagagcttaggaatattatagatgcagttgaagaaacaggatgatgtagtaagtaaaagaaagaggttgatgatacaccaattccataactca 613  Q
     || |||||||||||||  ||||| | ||||||||| ||||||||| |||| ||| | | |||||| || | |||||||||| |||||||||| || |||    
T  24656292 agtgaggaagagcttagtgatattctggatgcagttaaagaaacagaatgaagtaattactaaaaggaataagttgatgatataccaattccagaaatca 24656391  T
Q  614 tggaggagaatccaaagaagtgtctcacgtccaactaaactggaaaagtggaatatgatcata 676  Q
     |||| |||||||||||||||||||||| |||||  | ||  |||||||| ||||||| ||||    
T  24656392 gggagcagaatccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaacata 24656454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 504 - 676
Target Start/End: Original strand, 24672655 - 24672827
Alignment:
Q  504 ttgaatgtgtggtaaggaagagcttaggaatattatagatgcagttgaagaaacaggatgatgtagtaagtaaaagaaagaggttgatgatacaccaatt 603  Q
    |||||||||| |||||| ||| | | |  ||||||| |||| |||||||||||||| |||| ||    | |||||| || ||||||||||| || || ||    
T  24672655 ttgaatgtgtagtaaggtagaacgtggtgatattatggatggagttgaagaaacagaatgaagtgaccactaaaaggaataggttgatgatgcaacactt 24672754  T
Q  604 ccataactcatggaggagaatccaaagaagtgtctcacgtccaactaaactggaaaagtggaatatgatcata 676  Q
    ||| |||||| |||| || ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  24672755 ccagaactcagggagaaggatccagagaagtgtctcacatccaactaaaccggaaaagtggaatatgatcata 24672827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 519 - 676
Target Start/End: Original strand, 24634193 - 24634350
Alignment:
Q  519 ggaagagcttaggaatattatagatgcagttgaagaaacaggatgatgtagtaagtaaaagaaagaggttgatgatacaccaattccataactcatggag 618  Q
    ||||||||||||| ||||||  ||||||||||||||||||  ||||  ||   | |||||| || || ||||||||| |||||||||| |||| | ||||    
T  24634193 ggaagagcttagggatattaaggatgcagttgaagaaacataatgaaataaccattaaaaggaatagattgatgatataccaattccagaacttagggag 24634292  T
Q  619 gagaatccaaagaagtgtctcacgtccaactaaactggaaaagtggaatatgatcata 676  Q
     |||||||||||||||||||||| |||||  | ||  |||||||||||||||||||||    
T  24634293 tagaatccaaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcata 24634350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 507 - 676
Target Start/End: Original strand, 24679852 - 24680021
Alignment:
Q  507 aatgtgtggtaaggaagagcttaggaatattatagatgcagttgaagaaacaggatgatgtagtaagtaaaagaaagaggttgatgatacaccaattcca 606  Q
    ||||||| | ||| ||||| ||||  |||| || ||||||||||||||||||  | || |||   | |||||| || | |||||| ||| ||||||||||    
T  24679852 aatgtgtaggaagaaagagtttagcgatatcatggatgcagttgaagaaacataaagaagtaaccattaaaaggaataagttgataatataccaattcca 24679951  T
Q  607 taactcatggaggagaatccaaagaagtgtctcacgtccaactaaactggaaaagtggaatatgatcata 676  Q
     || ||| |||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  24679952 gaattcagggagtagaatccaaagaagtgtctcacaaccaactaaaccggaaaagtggaatatgatcata 24680021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 24678730 - 24678849
Alignment:
Q  167 atttgacattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaacaaagcagaattgctttacatgctta 266  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||  |||| |||| ||||||||||||||| ||| ||||||| || |||||  |||    
T  24678730 attttacattgattttccatatataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacagaatttctctacattttta 24678829  T
Q  267 gagaaagtaattaaaattta 286  Q
    |  |||||||| ||||||||    
T  24678830 gtcaaagtaatcaaaattta 24678849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 24646451 - 24646535
Alignment:
Q  193 ataaactattgaaacatacacagcattctgctcaattaataaggaaaacaaagcagaattgctttacatgcttagagaaagtaat 277  Q
    ||||||| |||||||||| |||| |||||| ||||||||||||||||||||| |||||||||  |||||| ||||||||||||||    
T  24646451 ataaactgttgaaacataaacagaattctggtcaattaataaggaaaacaaaacagaattgcaatacatgtttagagaaagtaat 24646535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 18158228 - 18158148
Alignment:
Q  172 acattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaacaaagcagaatt 252  Q
    |||||||||||||| |||| ||  ||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||    
T  18158228 acattgattttccacatataaactaactattgaaacatatacattattctgctcaattaataaggaaaacaaaacagaatt 18158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 445 - 669
Target Start/End: Original strand, 24676738 - 24676959
Alignment:
Q  445 ttacaaatcttacgcctgagatgtgtcctgtggttccggttttggaggctgaggagggtttgaatgtgtggtaaggaagagcttaggaatattatagatg 544  Q
    |||||||||||||| |||||||   || |||||||| |  || |||||||||| ||   ||||| |||| |  |||||||||||||| ||||||| ||||    
T  24676738 ttacaaatcttacggctgagat---tcttgtggttctgaattcggaggctgagcagcagttgaaagtgtagcgaggaagagcttagggatattatggatg 24676834  T
Q  545 cagttgaagaaacaggatgatgtagtaagtaaaagaaagaggttgatgatacaccaattccataactcatggaggagaatccaaagaagtgtctcacgtc 644  Q
    ||||||||| ||||  |||| |||  |  ||||||  | || ||||||||| |||||||||| || ||| |||| |||||||| || || || |||| ||    
T  24676835 cagttgaagtaacataatgaagtaacagctaaaagggatagattgatgatataccaattccagaagtcagggagtagaatccatagcagagtttcacatc 24676934  T
Q  645 caactaaactggaaaagtggaatat 669  Q
    |||| | ||  ||||||||||||||    
T  24676935 caacaataccagaaaagtggaatat 24676959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 24714698 - 24714746
Alignment:
Q  192 aataaactattgaaacatacacagcattctgctcaattaataaggaaaa 240  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  24714698 aataaactattgaaacatacacagcatcctgctcaattaaaaaggaaaa 24714746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 676
Target Start/End: Original strand, 24687531 - 24687621
Alignment:
Q  586 gttgatgatacaccaattccataactcatggaggagaatccaaagaagtgtctcacgtccaactaaactggaaaagtggaatatgatcata 676  Q
    |||||||||  |||||||||| || ||| | ||||||||||| | ||||||||||| | |||| |  | ||||||||||||||||||||||    
T  24687531 gttgatgatgtaccaattccaaaattcaggaaggagaatccataaaagtgtctcacatgcaacaatcccggaaaagtggaatatgatcata 24687621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 24692607 - 24692674
Alignment:
Q  172 acattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaa 240  Q
    ||||||||||||||||||   |||| | ||||||||| ||||||||||| ||| |||||||||||||||    
T  24692607 acattgattttccatatacagataatccattgaaacagacacagcattc-gctgaattaataaggaaaa 24692674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 24720199 - 24720254
Alignment:
Q  199 tattgaaacatacaca--gcattctgctcaattaataaggaaaacaaagcagaatt 252  Q
    ||||||||||||||||  | || ||||||||||||||||||||||||| |||||||    
T  24720199 tattgaaacatacacacagtatcctgctcaattaataaggaaaacaaaacagaatt 24720254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 22014310 - 22014230
Alignment:
Q  172 acattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaacaaagcagaatt 252  Q
    |||||||||||||| |||| ||  ||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||    
T  22014310 acattgattttccacatataaactaactattgaaacatatacagtattctgctcaattaataaggaaaacaaaacagaatt 22014230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 15282616 - 15282536
Alignment:
Q  172 acattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaacaaagcagaatt 252  Q
    |||||||||||||| |||| ||  ||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||    
T  15282616 acattgattttccacatataaactaactattgaaacatatacattattctgctcaattaataaggaaaacaaaacagaatt 15282536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 24224114 - 24224034
Alignment:
Q  172 acattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaacaaagcagaatt 252  Q
    |||||||||||||| |||| ||  ||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||    
T  24224114 acattgattttccacatataaactaactattgaaacatatacattattctgctcaattaataaggaaaacaaaacagaatt 24224034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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