View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11781_high_1 (Length: 1100)
Name: NF11781_high_1
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 386 - 1040
Target Start/End: Original strand, 7375290 - 7375950
Alignment:
| Q |
386 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7375290 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7375389 |
T |
|
| Q |
486 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
564 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7375390 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7375489 |
T |
|
| Q |
565 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7375490 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7375589 |
T |
|
| Q |
665 |
tctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacat |
764 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7375590 |
tcttacacaaagagtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacat |
7375689 |
T |
|
| Q |
765 |
aatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtgatcaatgtaacta |
861 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375690 |
aatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttgtctctcaatcatgtgtttattgtgatcaatgtaacta |
7375789 |
T |
|
| Q |
862 |
acttcaatgaaagtggcttccaaactctcttgacaagtgatggatcataaaattcagccaacagcaaagtaactgttgaggttttcaattattcaaatat |
961 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
7375790 |
acttcaaagaaagtggcttccaaattctcttgacaagtgatggatcataaaattcagccaacagcaaagtaacag------------------caaatat |
7375871 |
T |
|
| Q |
962 |
agtgctacagattacaacttcatattaaaaattacgtctcatttttgtgtattcagcttgataatatcaaataaatgat |
1040 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375872 |
agtgctacagattacaacttcatattaaaaactacgtctcatttttgtgtattcagcttgataatatcaaataaatgat |
7375950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 386 - 880
Target Start/End: Complemental strand, 7278549 - 7278029
Alignment:
| Q |
386 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7278549 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7278450 |
T |
|
| Q |
486 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
564 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7278449 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7278350 |
T |
|
| Q |
565 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7278349 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7278250 |
T |
|
| Q |
665 |
tctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacat |
764 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7278249 |
tcttacacaaagagtggagcagcttgagagagcatttacttttgacaagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacat |
7278150 |
T |
|
| Q |
765 |
aatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtg--atcaatgtaac |
859 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
7278149 |
aatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttgtctctcaatcatgtgtttattgtgatatcagtgtaac |
7278050 |
T |
|
| Q |
860 |
taacttcaatgaaagtggctt |
880 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7278049 |
taacttcaatgaaagtggctt |
7278029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 7278921 - 7278608
Alignment:
| Q |
17 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278921 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
7278822 |
T |
|
| Q |
117 |
aataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278821 |
aataaaattgaagctttggtgaatgaggatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgg |
7278722 |
T |
|
| Q |
217 |
gacctttgatgaatgaggatggtagcgagggtaaatgtgtgaa---agaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278721 |
gacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaa |
7278622 |
T |
|
| Q |
314 |
agtggaagctttat |
327 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7278621 |
agtggaagctttat |
7278608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 7374918 - 7375231
Alignment:
| Q |
17 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7374918 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
7375017 |
T |
|
| Q |
117 |
aataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7375018 |
aataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgg |
7375117 |
T |
|
| Q |
217 |
gacctttgatgaatgaggatggtagcgagggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375118 |
gacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaa |
7375217 |
T |
|
| Q |
314 |
agtggaagctttat |
327 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7375218 |
agtggaagctttat |
7375231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
| Q |
162 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
212 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7278543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
| Q |
162 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
212 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7375296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University