View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_high_11 (Length: 520)
Name: NF11781_high_11
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 24 - 510
Target Start/End: Original strand, 35222044 - 35222529
Alignment:
| Q |
24 |
tgacaaacattcctgctgaagaaaatctctgatttttgaaaattgattgcttgtcccgaagctttctcataaaatgctagaatatttttcataattgtcg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
35222044 |
tgacaaacattcctgctgaagaaaatctctgatttttgaaaattgattacttgtcccgaagctttctcataaactgctagaatattttttgtaattgtcg |
35222143 |
T |
|
| Q |
124 |
cttcagcaggctctactctaaaaaagagaaagcaatcatccgcaaacagcagatgggagactataggagcatttgtgcaaattttgactccataaatgtc |
223 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35222144 |
cttcagcaggctctgctctaaaaaagagaaagcaatcatccgtaaacagcagatgggagactataggagcatttgtgcaaattttgactccataaatgtc |
35222243 |
T |
|
| Q |
224 |
accactagcttctggccttccgaattaaagaggaaagtccttctgcacaaataatgaataagtatggcgacaaaggatctccttgtcttagtcctcgacc |
323 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35222244 |
accactagcttctg-ccttccgaattaaagaggaaagtccttctgcacaaataatgaataagtatggcgacaaaggatctccttgtcttagtcctcgacc |
35222342 |
T |
|
| Q |
324 |
tggaatactaggaccaattgcctcgtcattaactattaccgagtagtcggtagtctccacacacatcattatccacttaacccattgatgagaaaaaccc |
423 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35222343 |
tggaataataggaccaactgcctcgtcattaactattaccgagtagtcggtagtctccacacacatcattatccacttaacccattgatgagaaaaaccc |
35222442 |
T |
|
| Q |
424 |
attttaagcataacacacttaagatagttctagtctatcctatcatatgccttactaatatccagcttaaaagccacatcacctttg |
510 |
Q |
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| T |
35222443 |
attttaagcataacacacttaagatagttccagtctatcctatcatatgccttactaatatccagcttaaaagccgcatcacctttg |
35222529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 349 - 508
Target Start/End: Original strand, 19936087 - 19936246
Alignment:
| Q |
349 |
tcattaactattaccgagtagtcggtagtctccacacacatcattatccacttaacccattgatgagaaaaacccattttaagcataacacacttaagat |
448 |
Q |
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|||||||| || |||||||||||| |||||||||||||||||||||||| || ||||| ||| |||||| ||||||||||||||||| || || |||| |
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| T |
19936087 |
tcattaacaataaccgagtagtcgacagtctccacacacatcattatccatttgacccactgaatagaaaatcccattttaagcataacgcatttgagat |
19936186 |
T |
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| Q |
449 |
agttctagtctatcctatcatatgccttactaatatccagcttaaaagccacatcacctt |
508 |
Q |
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| ||| ||||||| || ||||| || || || ||||| ||||| ||||||||||| |||| |
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| T |
19936187 |
aattccagtctattctgtcataagctttgcttatatcaagcttgaaagccacatcccctt |
19936246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 7807551 - 7807507
Alignment:
| Q |
267 |
tgcacaaataatgaataagtatggcgacaaaggatctccttgtct |
311 |
Q |
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| T |
7807551 |
tgcacaaataataaataagtatggcgacaagggatccccttgtct |
7807507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 17455973 - 17455892
Alignment:
| Q |
259 |
agtccttctgcacaaataatgaataagtatggcgacaaaggatctccttgtcttagtcctcgacctggaatactaggaccaa |
340 |
Q |
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|||||||| || |||| |||||||||||| || ||||| ||||| ||||||| || ||| |||||||||| ||||||||| |
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| T |
17455973 |
agtccttcggcgcaaagaatgaataagtaaggtgacaacggatcaccttgtcgtaatccatgacctggaatgataggaccaa |
17455892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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