View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_high_18 (Length: 384)
Name: NF11781_high_18
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 17070552 - 17070200
Alignment:
| Q |
20 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070552 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
17070453 |
T |
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| Q |
120 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070452 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
17070353 |
T |
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| Q |
220 |
gaattagctcgttcttgttgacttgatccctcatgaaatgaaaccttgtctctacgtgttttctcttgccatggaagatagaattcttagctaagttgat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070352 |
caattagctcgttcttgttgacttgatccctcatgaaatggaaccttgtctctacgtgttttctcttgccatggaagatagaattcttagctaagttgat |
17070253 |
T |
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| Q |
320 |
tgcagacttgttatcactcttcagcttgactgcaacttcatcacctatcttca |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070252 |
tgcagacttgttatcactcttcagcttgactgcaacttcatcacctatcttca |
17070200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 17577721 - 17578073
Alignment:
| Q |
20 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577721 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
17577820 |
T |
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| Q |
120 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577821 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
17577920 |
T |
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| Q |
220 |
gaattagctcgttcttgttgacttgatccctcatgaaatgaaaccttgtctctacgtgttttctcttgccatggaagatagaattcttagctaagttgat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577921 |
caattagctcgttcttgttgacttgatccctcatgaaatggaaccttgtctctacgtgttttctcttgccatggaagatagaattcttagctaagttgat |
17578020 |
T |
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| Q |
320 |
tgcagacttgttatcactcttcagcttgactgcaacttcatcacctatcttca |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17578021 |
tgcagacttgttatcactcttcagcttgactgcaacttcatcacctatcttca |
17578073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 316
Target Start/End: Complemental strand, 29355717 - 29355475
Alignment:
| Q |
69 |
tatagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttcttagcttcaaaaactgatctctcttca |
168 |
Q |
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|||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||| | |||||||||||||| |||||||||||| ||||||||| |
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| T |
29355717 |
tatagtttgaattatacaaccaatactc---cttaattcaaactatcaaagttcaccgttcatatttctcttcttaacttcaaaaactggcctctcttca |
29355621 |
T |
|
| Q |
169 |
gagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaagaattagctcgttcttgttgacttgatccctcatgaaatgaaaccttgt |
268 |
Q |
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||||| |||| |||||||| ||| ||||||||||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||| |||||| |
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| T |
29355620 |
tagctt--gtgaccaagtctgccaattggtcttgtgtaggacaatactcaacacttagcgtgttcttgttgacttgatcgctcagaaaatgaagccttgt |
29355523 |
T |
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| Q |
269 |
ctctacgtgttttctcttgccatggaagatagaattcttagctaagtt |
316 |
Q |
| |
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|||| |||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
29355522 |
ttctatacgtttactcttgccatggaagataggattcttaactaagtt |
29355475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 68 - 368
Target Start/End: Original strand, 40740733 - 40741030
Alignment:
| Q |
68 |
ctatagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttcttagcttcaaaaactgatctctcttc |
167 |
Q |
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||||||||| ||||||||||| |||||||| ||| | ||||| ||| |||||||||||| | |||||| |||||||||||||||||| || ||||| |
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| T |
40740733 |
ctatagtttaaattatacaaccaatactct--cttaaatcaaaatattaaaattcaccactcctatttcatttcttagcttcaaaaactagcctgtcttc |
40740830 |
T |
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| Q |
168 |
agagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaagaattagctcgttcttgttgacttgatccctcatgaaatgaaaccttg |
267 |
Q |
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| | |||||||||| |||| ||| || || | ||||||| ||||| |||||| | |||||| |||||| |||||||||||| | | ||||| || || | |
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| T |
40740831 |
ataacttttgtgaataagtatgttaattgtttttgtgtaagacaaaactcaacacttagcttgttcttattgacttgatccttaagaaaatggaa-ctcg |
40740929 |
T |
|
| Q |
268 |
tctctacgtgttttctcttgccatggaagatagaattcttagctaagttgattgcagacttgttatcactcttcagcttgactgcaacttcatcacctat |
367 |
Q |
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| |||| |||||| ||||||||||| |||| | ||||||| |||||||||||||||||||||||||| |||| || |||||| ||| ||||||| ||| |
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| T |
40740930 |
tttctatgtgtttaatcttgccatggcagatgggattcttaactaagttgattgcagacttgttatcaatctttagtctgactggaacctcatcacatat |
40741029 |
T |
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