View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11781_high_19 (Length: 381)

Name: NF11781_high_19
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11781_high_19
NF11781_high_19
[»] chr3 (3 HSPs)
chr3 (6-369)||(11751914-11752275)
chr3 (173-252)||(47395601-47395680)
chr3 (201-342)||(36834078-36834219)
[»] chr1 (6 HSPs)
chr1 (198-311)||(32920196-32920308)
chr1 (1-90)||(35601053-35601143)
chr1 (200-253)||(45921141-45921194)
chr1 (169-251)||(35601259-35601341)
chr1 (1-85)||(7446117-7446202)
chr1 (173-234)||(28562179-28562240)
[»] chr4 (1 HSPs)
chr4 (173-253)||(54475418-54475498)
[»] chr2 (3 HSPs)
chr2 (173-237)||(35133242-35133306)
chr2 (173-249)||(40330239-40330315)
chr2 (173-237)||(19267476-19267540)
[»] chr8 (1 HSPs)
chr8 (173-246)||(8622605-8622678)
[»] chr6 (1 HSPs)
chr6 (1-85)||(31100640-31100725)
[»] chr5 (1 HSPs)
chr5 (1-85)||(7818989-7819074)
[»] chr7 (1 HSPs)
chr7 (173-237)||(22902010-22902074)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 369
Target Start/End: Original strand, 11751914 - 11752275
Alignment:
Q  6 tacagggttctatctctcgggttctccggtttcatccgaacatcaacagacatcttgtttgcagagctcaccgcaattcaccgtgctactccgattctct 105  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  11751914 tacagggttctatctctcgggttctccggtttcattccaacatcaacagacatcttgtttgcagagctcactgcaattcaacgtg-tactccgattctct 11752012  T
Q  106 tctatccataagactccttaatgaacatgcttcggagtatcatgcttatgctgatttaatacaaatacaagatattaaagatctcttgtccacaagaaat 205  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11752013 tctatccataagactccttaatgaacatgcttcagagtatcatgcttatgctgatttaatacaaatacaagatattaaagatctcttgtccacaagaaat 11752112  T
Q  206 ttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactcatcctactc 305  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  11752113 ttctcgattcatcattgtccgagagaaggaaatcaatgtgctgacttcatggttaaatttggagcat-ctcgaatgacgatttttccactcatcctactc 11752211  T
Q  306 ctccaaacgtcctcctatctttgatcaggatcgacgccgtggaaacctactttcctagagccta 369  Q
    ||||||| | |||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  11752212 ctccaaatgacctcctatctttgatcaggatcgatgccatgggaacctacttccctagagccta 11752275  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 47395680 - 47395601
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgactt 252  Q
    ||||||||||| |||||||| |||||||| ||||||||  || |||| ||||| |||||||| ||| ||||||| |||||    
T  47395680 caagatattaaggatctcttttccacaagcaatttctccgtttatcactgtctcagagaagggaatcaatgtgcagactt 47395601  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 342
Target Start/End: Complemental strand, 36834219 - 36834078
Alignment:
Q  201 gaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactcatcc 300  Q
    |||| ||||| ||||||||||| ||  ||||||| ||| ||||||| ||||||  || |||  ||| |||  |||||||||| || ||| |||  |||      
T  36834219 gaaacttctccattcatcattgcctcggagaagggaatcaatgtgcagacttcttggctaagcttggagccacctcgaatgaagaatttgccagccatgt 36834120  T
Q  301 tactcctccaaacgtcctcctatctttgatcaggatcgacgc 342  Q
    |||||||||||  | ||||||  |||||||||||||||||||    
T  36834119 tactcctccaagtgacctccttcctttgatcaggatcgacgc 36834078  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 32920308 - 32920196
Alignment:
Q  198 caagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactca 297  Q
    ||||||||||||| ||||| |||||||| | |||||||||  |||||| |||||||| || |||||| | ||| |  || |||||||||||||| || ||    
T  32920308 caagaaatttctctattcagcattgtctcatagaaggaaaccaatgtgttgacttcatggctaaattaggagc-ttttctaatgaggatttttctaccca 32920210  T
Q  298 tcctactcctccaa 311  Q
    ||||||||||||||    
T  32920209 tcctactcctccaa 32920196  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 35601053 - 35601143
Alignment:
Q  1 aattctacagggttctatctctcggg-ttctccggtttcatccgaacatcaacagacatcttgtttgcagagctcaccgcaattcaccgtg 90  Q
    |||||| |||| || ||||||||||| |||||||| ||  ||| ||| ||||| || || |||||||| ||||||||||||||||||||||    
T  35601053 aattctgcaggtttttatctctcggggttctccggatttgtcctaacttcaactgatattttgtttgccgagctcaccgcaattcaccgtg 35601143  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 45921194 - 45921141
Alignment:
Q  200 agaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttc 253  Q
    ||||| ||||| |||||||||||||| |||||||||||| ||||| ||||||||    
T  45921194 agaaacttctctattcatcattgtctcagagaaggaaatcaatgtactgacttc 45921141  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 35601259 - 35601341
Alignment:
Q  169 aatacaagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgact 251  Q
    ||||||||| || ||||| ||||||||| ||||||  ||| | ||||||||||||||  | ||||||||| ||||| ||||||    
T  35601259 aatacaagacataaaagacctcttgtcctcaagaagcttcaccattcatcattgtctccgtgaaggaaatcaatgtactgact 35601341  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7446202 - 7446117
Alignment:
Q  1 aattctacagggttctatctctcggg-ttctccggtttcatccgaacatcaacagacatcttgtttgcagagctcaccgcaattca 85  Q
    |||||| |||| |||||||||||||| |||||| | |||||||  |  ||||| |||||| |||| || |||||||||||||||||    
T  7446202 aattctgcaggtttctatctctcgggattctccagattcatccctatttcaactgacatcctgttagccgagctcaccgcaattca 7446117  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 28562240 - 28562179
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaagg 234  Q
    ||||| || ||||| ||||| || |||||||||||||| || ||||||||||| ||||||||    
T  28562240 caagacatcaaagacctcttttcaacaagaaatttctccatccatcattgtctaagagaagg 28562179  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 54475498 - 54475418
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttc 253  Q
    ||||| ||||| |||||| | ||| ||||||||||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  54475498 caagacattaaggatctcctttcctcaagaaatttctccattcatcattgtcttagagaagggaatcaatgtgccgacttc 54475418  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 35133306 - 35133242
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 237  Q
    |||||||| | ||||||||||||| |||| |||||| | |||||||||||||| |||||||||||    
T  35133306 caagatatcagagatctcttgtcctcaaggaatttcaccattcatcattgtctaagagaaggaaa 35133242  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 40330239 - 40330315
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctga 249  Q
    |||||||| | ||||||||||||| |||| |||||| |  ||||||||||||| |||||||||||  ||||||||||    
T  40330239 caagatatcagagatctcttgtcctcaaggaatttcaccgttcatcattgtctaagagaaggaaaccaatgtgctga 40330315  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 19267476 - 19267540
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 237  Q
    ||||| || ||||||||||||||| |||| |||||| |  |||||||||| || |||||||||||    
T  19267476 caagacatcaaagatctcttgtcctcaaggaatttcaccgttcatcattgcctaagagaaggaaa 19267540  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 8622605 - 8622678
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgc 246  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||  |||| || |||||||  ||| |||||||    
T  8622605 caagatattaaagatctcttgtcaacaaggaatttctccattcactattgcctcagagaagagaatcaatgtgc 8622678  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31100725 - 31100640
Alignment:
Q  1 aattctacagggttctatctctcggg-ttctccggtttcatccgaacatcaacagacatcttgtttgcagagctcaccgcaattca 85  Q
    |||||| |||| | ||| |||||||| |||| ||| |||||||  | |||||| |||||||||||||| |||||||||||||||||    
T  31100725 aattctgcaggttactacctctcgggattcttcggattcatccctatatcaactgacatcttgtttgccgagctcaccgcaattca 31100640  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7818989 - 7819074
Alignment:
Q  1 aattctacagggttctatctctcggg-ttctccggtttcatccgaacatcaacagacatcttgtttgcagagctcaccgcaattca 85  Q
    |||||| |||| | ||| |||||||| |||||| | |||||||  | |||||| |||||||||||||| |||||||||||||||||    
T  7818989 aattctgcaggttactacctctcgggattctccagattcatccctatatcaactgacatcttgtttgccgagctcaccgcaattca 7819074  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 22902074 - 22902010
Alignment:
Q  173 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 237  Q
    |||||||| ||||||||||||||  |||| |||||| |  ||||||||||||| |||||||||||    
T  22902074 caagatatcaaagatctcttgtcttcaaggaatttcaccgttcatcattgtctaagagaaggaaa 22902010  T

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