View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11781_high_24 (Length: 310)
Name: NF11781_high_24
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 23964877 - 23964794
Alignment:
| Q |
144 |
gacgcgacgtttaaagtaacataggtaagactctcataaaactaaacatgaggttaacctttcactaatctcgacttctctcag |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23964877 |
gacgcgacgtttaaagtaacataggtaagactctcataaaactaaacatgaggttaacctttcactaatctcgacttctctcag |
23964794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 23965006 - 23964945
Alignment:
| Q |
15 |
aaatgcaacataccatgtttaataagcctctaagactatataattaccgattatatatctgc |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23965006 |
aaatgcaacataccatgtttaataagcctctaagactatataataaccgattatatatctgc |
23964945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University