View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_high_25 (Length: 308)
Name: NF11781_high_25
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_25 |
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| [»] scaffold0256 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 21550032 - 21549757
Alignment:
| Q |
21 |
ttaaggaatttacgattaactaacatcttcagacgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatactt |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21550032 |
ttaaggaatttacgattaactaacatcttcagacaaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatactt |
21549933 |
T |
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| Q |
121 |
ttagctctaaagtctcgaaatactcctttttcgtgcacacatgataagagcagcctgattccaagacgcaacnnnnnnnnggtttccaacttgtgagtgc |
220 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
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| T |
21549932 |
ttagctctaaagtctcaaaatactcctttttcgggcacacatgataagagcagcttga-tccaagacgcaac-ttttttcggtttccaacttgtgagtgc |
21549835 |
T |
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| Q |
221 |
tagtgcacccccactctcaaaaccatcttcatctaggaaactacaacttgaacgaaataactaccattttctcctttg |
298 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549834 |
tagtgcacccccactctcataaccatcttcatctaggaaactacaacttgaacgaaataactaccattttctcctttg |
21549757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 10628740 - 10628633
Alignment:
| Q |
42 |
aacatcttcagacgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaat |
141 |
Q |
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||||| || |||||||| |||| ||||||||||| ||| |||||||| || || ||||| | ||| ||||| | | |||| ||||||||||| || || | |
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| T |
10628740 |
aacattttgagacgaatagtactcataccttgaattttacaagccttattattaccaaggcaaacaactccaccttctttcagctctaaagtttcaaagt |
10628641 |
T |
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| Q |
142 |
actccttt |
149 |
Q |
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|||||||| |
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| T |
10628640 |
actccttt |
10628633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 17706 - 17561
Alignment:
| Q |
42 |
aacatcttcagacgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaat |
141 |
Q |
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||||| || ||||| || |||| ||||||||||| ||| |||||||| || || ||||| ||||| ||||| | | |||| |||||||| || || || | |
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| T |
17706 |
aacattttgagacggatagtacccataccttgaattttacaagccttattattcccaaggcgaactactccaccttctttcagctctaacgtttcaaagt |
17607 |
T |
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| Q |
142 |
actcctttttcgtgcacacatgataagagcagcctgattccaagac |
187 |
Q |
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| T |
17606 |
actcctttctcggacagatgtgataagagcatccagagtccaagac |
17561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 10611601 - 10611722
Alignment:
| Q |
66 |
ataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaatactcctttttcgtgcacacatgat |
165 |
Q |
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|||||||||| ||| |||||||| ||||||||||| ||||| ||||| | | ||| |||||||| || || || ||||||||| ||| || | |||| |
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| T |
10611601 |
ataccttgaattttacaagccttattgtttccaaggcgaactactccaccttcttccagctctaacgtttcaaagtactcctttctcggacagatgtgat |
10611700 |
T |
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| Q |
166 |
aagagcagcctgattccaagac |
187 |
Q |
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| T |
10611701 |
aagagcacccagagtccaagac |
10611722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 16263290 - 16263322
Alignment:
| Q |
220 |
ctagtgcacccccactctcaaaaccatcttcat |
252 |
Q |
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| T |
16263290 |
ctagtgcacccgcactctcaaaaccatcttcat |
16263322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 1416 - 1468
Alignment:
| Q |
201 |
ggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatc |
253 |
Q |
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|||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
1416 |
ggttcccaacttgtgaccactagtgcacccgcactctcataaccatcttcatc |
1468 |
T |
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