View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_high_29 (Length: 272)
Name: NF11781_high_29
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 21056180 - 21055909
Alignment:
| Q |
1 |
ttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaacttatccgcaactcca |
100 |
Q |
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| T |
21056180 |
ttttctatatctaatctactttacaataagcatgccattgtcaagttaaactcaaacactccaatgcaacttccagtaagtaaacttatccgcaactcca |
21056081 |
T |
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| Q |
101 |
aaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatc |
200 |
Q |
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| T |
21056080 |
aaaatagaggtatacaatgcatcactggagcacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatc |
21055981 |
T |
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| Q |
201 |
attcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagat |
272 |
Q |
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| T |
21055980 |
attcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagat |
21055909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 26365771 - 26366030
Alignment:
| Q |
1 |
ttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaacttatccgcaactcca |
100 |
Q |
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|||||||||| |||| | ||| ||||| |||||||||| |||| |||||| ||||||||| ||| |||| || ||||||||||| || |||| ||| |
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| T |
26365771 |
ttttctatattcaatcaaatttcctataggcatgccattttcaaattaaacccaaacactc---tgcagcttccaataagtaaacttgtcaacaac-cca |
26365866 |
T |
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| Q |
101 |
aaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatc |
200 |
Q |
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|||| ||||||||||||||||||||| | | |||||||| |||| | ||||| ||| |||||||||| |||||||||| ||||||| |||||| ||| |
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| T |
26365867 |
aaaa-agaggtatacaatgcatcact--actgcattgttgattcataatccaaagcatcgacttatcaatgaacaaattattacacaactaaataacatc |
26365963 |
T |
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| Q |
201 |
attcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaat |
267 |
Q |
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||||| |||| ||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||| |
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| T |
26365964 |
attcaaatagataaaccagaaatggggtaaatgccagtaaagatcatattgtgccagcataaaaaat |
26366030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 26363407 - 26363540
Alignment:
| Q |
133 |
cattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatcattcatatagggaaattagaaatggggtaaat |
232 |
Q |
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||||||||||||||| ||||| | ||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
26363407 |
cattgttgtttcacaatccaaagaagttacttatcaaagaacaaattattacacaaccaaataatatcattcaaatagataaaccagaaatggggtaaat |
26363506 |
T |
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| Q |
233 |
gcgagtaaatatcatatagtgccggcataaaaaa |
266 |
Q |
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| T |
26363507 |
gccagtaaagatcgcatagtgccagcataaaaaa |
26363540 |
T |
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