View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_high_33 (Length: 246)
Name: NF11781_high_33
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 17857769 - 17858002
Alignment:
| Q |
1 |
cctttggttgaatagatattaagaacccaacaaagagaagaagcattattctagaaggatggaacaccattttcactaattcactcttaaacaagaacag |
100 |
Q |
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| T |
17857769 |
cctttggttgaatagatattaagaacccaacaaagagaagaagcattattctagaaggatggaacaccattttcactaattcactcttaaacaagaacaa |
17857868 |
T |
|
| Q |
101 |
aaatagaagggtatattgtttctgttttcttatggtccattcctgtagatataagcttgttatatatgccccactagatttggaggcatgctttaaatct |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |
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| T |
17857869 |
aaatagaa-ggtatattgtttctgttttcttatggtccattcctgtagatataagcttgttatatatgccccactagatttggagggagactttaaagct |
17857967 |
T |
|
| Q |
201 |
ctaaagcaaagtgtgcctacaagaattttagattc |
235 |
Q |
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|||||||||| | ||||||||||||||||||||| |
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| T |
17857968 |
ttaaagcaaagagggcctacaagaattttagattc |
17858002 |
T |
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