View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11781_high_40 (Length: 236)

Name: NF11781_high_40
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11781_high_40
NF11781_high_40
[»] chr4 (16 HSPs)
chr4 (14-221)||(3749937-3750144)
chr4 (19-185)||(5559999-5560165)
chr4 (53-221)||(5570132-5570300)
chr4 (19-185)||(5894255-5894421)
chr4 (50-185)||(5614112-5614247)
chr4 (19-181)||(5847268-5847436)
chr4 (53-221)||(5852021-5852189)
chr4 (123-185)||(5885359-5885421)
chr4 (53-214)||(5565587-5565748)
chr4 (19-220)||(5859054-5859255)
chr4 (121-214)||(5605973-5606066)
chr4 (133-206)||(6030725-6030798)
chr4 (66-165)||(251689-251788)
chr4 (53-204)||(5554233-5554377)
chr4 (119-175)||(5538321-5538377)
chr4 (19-104)||(5885443-5885528)
[»] chr8 (2 HSPs)
chr8 (26-179)||(1486246-1486399)
chr8 (66-185)||(23268459-23268578)
[»] scaffold0454 (1 HSPs)
scaffold0454 (26-179)||(1431-1586)
[»] chr2 (1 HSPs)
chr2 (118-165)||(32546952-32546999)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 3749937 - 3750144
Alignment:
Q  14 agatgaaggccgataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaacttt 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749937 agatcaaggccgataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaacttt 3750036  T
Q  114 catggttgaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactgagatatat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3750037 catggttgaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactgagatatat 3750136  T
Q  214 gctgtagt 221  Q
    ||||||||    
T  3750137 gctgtagt 3750144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 5559999 - 5560165
Alignment:
Q  19 aaggccgataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatgg 118  Q
    |||||| ||||||||||| ||| |||  ||||||||||| |||||||||||||||||| |||||| ||||||||||  |||||||||||||  |||| |     
T  5559999 aaggccaataacatgtccctcaatgtcacatgtaacacccctccaattgcagcaagcagtgctttgattccacaatattagtttggtggaatattcagga 5560098  T
Q  119 ttgaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagagg 185  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  5560099 ttgaatgtgagattgttttttaattgatgcaacaatgattgttgatcctcaagacatttggtagagg 5560165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 5570300 - 5570132
Alignment:
Q  53 acaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggttgaatgtgagattgttttttaattgaagcaaca 152  Q
    |||||| |||||| |||||||||| |||| |||||||| |||| ||||||||||||| ||||| ||||| |||||||||| ||||||| ||| |||||||    
T  5570300 acaccattccaatagcagcaagcagtgctcttattccataattttagtttggtggaagtttcagggttgtatgtgagattattttttagttggagcaaca 5570201  T
Q  153 atgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctgtagt 221  Q
    | |||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||||||| |||||    
T  5570200 acgattgttgatcctcaagacatttggctgaggcaacagtgatttggaaagtgagatatatgcagtagt 5570132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 5894421 - 5894255
Alignment:
Q  19 aaggccgataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatgg 118  Q
    |||||| ||||||||||| |||||||  || || |||||||||||||||||||||||| || ||||||||||||||  ||||||||| |||| |||| |     
T  5894421 aaggccaataacatgtccctcattgtcacaagttacaccactccaattgcagcaagcagtggttttattccacaatattagtttggtagaaccttcagga 5894322  T
Q  119 ttgaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagagg 185  Q
    |  ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||| ||||    
T  5894321 tgaaatgtgagattttttttgaattggagcaacaatgattgttgatcctcaagacatatggctgagg 5894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 5614112 - 5614247
Alignment:
Q  50 gtaacaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggttgaatgtgagattgttttttaattgaagca 149  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||  |||||| |||||| ||||| | |  |||| |||||||||||| ||||||||||    
T  5614112 gtaacgccactccaattgcagcatgcaatgcttttattccacaatattagttttgtggaattttcaggatgaaatgcgagattgtttttgaattgaagca 5614211  T
Q  150 acaatgattgttgatcctcaagacatttggcagagg 185  Q
    |||| | | |||||||||||||||||||||||||||    
T  5614212 acaaagttcgttgatcctcaagacatttggcagagg 5614247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 5847436 - 5847268
Alignment:
Q  19 aaggccgataacatgtccatcattgttgcatgtaacaccactccaattgca------gcaagcaatgcttttattccacaattctagtttggtggaactt 112  Q
    |||||| ||||||| ||| |||||||  || ||||||||||||||||||||      |||||||||||||||||||||||||  |||||| |||||| |     
T  5847436 aaggccaataacatatccctcattgtcacaggtaacaccactccaattgcacttgcagcaagcaatgcttttattccacaatattagtttcgtggaattc 5847337  T
Q  113 tcatggttgaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggca 181  Q
    ||| | |  ||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||    
T  5847336 tcaggatgaaatgtgagattgtttttaaattggatcaaaaatgattgttgatcctcaagacatttggca 5847268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 5852189 - 5852021
Alignment:
Q  53 acaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggttgaatgtgagattgttttttaattgaagcaaca 152  Q
    ||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||| ||||| ||| ||||| |||||| |||| || |||||| | ||    
T  5852189 acaccactccaatcgcagcaagcaatgattttattccagaattttagtttggtggaaatttcagggtcgaatgcgagattattttatagttgaagtagca 5852090  T
Q  153 atgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctgtagt 221  Q
    ||   |||||||| || ||||||||||| |||| |||   |||||||||||||| ||| |||| |||||    
T  5852089 atagatgttgatcttcgagacatttggctgaggcaacggtgatttggaaactgatataaatgcagtagt 5852021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 5885421 - 5885359
Alignment:
Q  123 atgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagagg 185  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  5885421 atgtgagattgttttttaattggagcaacagtgattgttgatcctcaagacatttggcagagg 5885359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 5565587 - 5565748
Alignment:
Q  53 acaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggtt-gaatgtgagattgttttttaattgaagcaac 151  Q
    |||||||||||||||||||||| |||||||| |||||||   || |||||  |  |||| || || || |||||||||||||||||| | ||| |||||     
T  5565587 acaccactccaattgcagcaaggaatgctttgattccactgctccagtttattaaaactgtc-tgcttcgaatgtgagattgtttttaatttggagcaat 5565685  T
Q  152 aatgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactgagatatatg 214  Q
    |||||||||||||||||||||||||| || |||| |||| | || |||||||| | |||||||    
T  5565686 aatgattgttgatcctcaagacatttagccgaggcaacagatatctggaaactcatatatatg 5565748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 5859054 - 5859255
Alignment:
Q  19 aaggccgataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttattccacaattct-agtttggtggaactttcatg 117  Q
    |||||| ||||||||||| ||| |||  || || ||||||||||| |||||||| |||||||||| |||||||| | || |||||| | ||||||||       
T  5859054 aaggccaataacatgtccttcactgtcacaagttacaccactccagttgcagcatgcaatgctttgattccaca-tcctcagtttgcttgaactttctac 5859152  T
Q  118 gttgaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctg 217  Q
     |||||  ||||| | || |||||||| || | |||||||| |||||| |||||||||||||||||||  | | ||||||||||| ||| |||||||| |    
T  5859153 cttgaacatgagactattctttaattggagtagcaatgattcttgatcatcaagacatttggcagaggctaaagagatttggaaagtgatatatatgcag 5859252  T
Q  218 tag 220  Q
    |||    
T  5859253 tag 5859255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 5605973 - 5606066
Alignment:
Q  121 gaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactgagatatatg 214  Q
    |||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| || |||| |||| | || |||||||| | |||||||    
T  5605973 gaatgtgagattgtttttaatttggagcaataatgattgttgatcctcaagacatttagccgaggcaacagatatctggaaactcatatatatg 5606066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 6030798 - 6030725
Alignment:
Q  133 gttttttaattgaagcaacaatgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaactga 206  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||| ||| || ||||||||    
T  6030798 gttttttaattgaagcaacaatgagggttgatcgccaagacatttggcagaggtaacagagaatttgaaactga 6030725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 251788 - 251689
Alignment:
Q  66 tgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggttgaatgtgagattgttttttaattgaagcaacaatgattgttgatc 165  Q
    |||||||| || |||||| ||||||||  |  |||||||||||||||| | | |||||||||||||||||||||||||| ||   |||||||||||||||    
T  251788 tgcagcaaacattgctttgattccacagcttcagtttggtggaactttgaggcttgaatgtgagattgttttttaattggagaggcaatgattgttgatc 251689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 5554233 - 5554377
Alignment:
Q  53 acaccactccaattgcagcaagcaatgcttttattccacaattct-agtttggtggaactttcatggttgaatgtgagattgttttttaattgaagcaac 151  Q
    ||||| ||||||||||||||||| ||||||| |||||| | | || ||||| ||||||||||   |||| |||||||| || ||||||||||| | ||||    
T  5554233 acaccgctccaattgcagcaagctatgctttgattccata-tcctcagtttagtggaactttttgggttaaatgtgaggttattttttaattggatcaac 5554331  T
Q  152 aatgattgttgatcctcaagacatttggcagaggtaacaaagatttggaaact 204  Q
    ||||||       ||||||||||||||||||||| || | |||||||||||||    
T  5554332 aatgat-------cctcaagacatttggcagaggcaaaagagatttggaaact 5554377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 5538377 - 5538321
Alignment:
Q  119 ttgaatgtgagattgttttttaattgaagcaacaatgattgttgatcctcaagacat 175  Q
    |||||| | |||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  5538377 ttgaattttagattgttctttaattgaagcagcaatgattgttgatcatcaagacat 5538321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5885528 - 5885443
Alignment:
Q  19 aaggccgataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttattccacaattctagtttgg 104  Q
    |||||| | ||||| ||| |||||||  || ||||||||||||||| ||||||||||  || ||| ||||||||||  ||||||||    
T  5885528 aaggccaacaacatatccctcattgtcacaagtaacaccactccaactgcagcaagccgtgttttgattccacaatattagtttgg 5885443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 1486246 - 1486399
Alignment:
Q  26 ataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggttgaatg 125  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||||| | || |||||||||| |||| |||||||||||||  |||||| |  ||||    
T  1486246 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagtgtttttattccataattttagtttggtggaaaattcatgatcaaatg 1486345  T
Q  126 tgagattgttttttaattgaagcaacaatgattgttgatcctcaagacatttgg 179  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  1486346 tgagattgttttttaactggagcaacaatgagtgttgatcctcaagacatttgg 1486399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 23268459 - 23268578
Alignment:
Q  66 tgcagcaagcaatgcttttattccacaattctagtttggtggaactttcatggttgaatgtgagattgttttttaattgaagcaacaatgattgttgatc 165  Q
    ||||||||||| |||||||||||||||||  |||||| |||||| ||||| | |  |||||||||||||||||||||||||||||||  | | |||||||    
T  23268459 tgcagcaagcagtgcttttattccacaatattagttttgtggaattttcaggatgaaatgtgagattgttttttaattgaagcaacagagttcgttgatc 23268558  T
Q  166 ctcaagacatttggcagagg 185  Q
    |||||||||||| |||||||    
T  23268559 ctcaagacatttagcagagg 23268578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 1431 - 1586
Alignment:
Q  26 ataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaat-gcttttattccacaattctagtttggtggaactttcatggttgaat 124  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||||| | | | |||||||||| |||| |||||||||||||  |||||| |  |||    
T  1431 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagttgtttttattccataattttagtttggtggaaaattcatgatcaaat 1530  T
Q  125 gtgagattgtttttt-aattgaagcaacaatgattgttgatcctcaagacatttgg 179  Q
    ||||||||||||||| || || ||||||||||| ||||||||||||||||||||||    
T  1531 gtgagattgtttttttaactggagcaacaatgagtgttgatcctcaagacatttgg 1586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 32546999 - 32546952
Alignment:
Q  118 gttgaatgtgagattgttttttaattgaagcaacaatgattgttgatc 165  Q
    |||||||||||| ||||| || |||||||||||||| |||||||||||    
T  32546999 gttgaatgtgaggttgttcttcaattgaagcaacaaagattgttgatc 32546952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University