View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_high_6 (Length: 597)
Name: NF11781_high_6
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 81 - 589
Target Start/End: Original strand, 1155060 - 1155569
Alignment:
| Q |
81 |
tggagcttgtt-cagtccatgaagtgtattcttcaacttatacaccttatgcccattgccgttaatttcatatccgcaaggctgttccacaaacacttat |
179 |
Q |
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| T |
1155060 |
tggagcttgtttcagtccatgaagtgtattcttcaacttatacaccttatgcccattgccgttaatttcatatccgcaaggctgttccacaaacacttat |
1155159 |
T |
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| Q |
180 |
tcattgagtagaccatgcaaaaatgctgaatttacatccaattgatagatttacatcccctttgagtagtaaccgcaagcatttgtcgagttgtatctaa |
279 |
Q |
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| T |
1155160 |
tcattgagtagaccatgcaaaaatgctgaatttacatccaattgatagatttacatcccctttgagtagtaactgcaagcattagtcgagttgtatctaa |
1155259 |
T |
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| Q |
280 |
tcttgctgccggtgtgaagacttcatagtaattgacaccatgttgttgagcatatcttttttccacaagtcttgctttgtatttatctatttctccattc |
379 |
Q |
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| T |
1155260 |
tcttgctgccggtgtgaagacttcatagtaatcgaaaccatgttgttgagcatatcttttttccacaagtcttgctttgtatttatctatttctccattc |
1155359 |
T |
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| Q |
380 |
tcattgagctttgttttgaatatccatttcactctaatcttctttctgtcagccggtaaatctgtcaacttccaagagtcattattctcaattgattcta |
479 |
Q |
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| T |
1155360 |
tcattgagctttgttttgaatatccatttcactctaatcttctttccgtcagccggtaaatctgtcaacttccaagagtcattattctcaattgattcta |
1155459 |
T |
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| Q |
480 |
tttccaagttcattgcatttctccgtttttcactcttcacagcttcctcaaatgagactgggtcagcagatgcaaacatggtcatgttagtcatgcatcc |
579 |
Q |
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| T |
1155460 |
tttccaagttcattgcatttctccgtttttcactcttcacagcttcctcaaatgagattgggtcagcagatgcaaacatggtcatgttagtcatgcatcc |
1155559 |
T |
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| Q |
580 |
ttcttcttct |
589 |
Q |
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|||||||||| |
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| T |
1155560 |
ttcttcttct |
1155569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 1155020 - 1155079
Alignment:
| Q |
18 |
cttttagaaaatacgattctatacgaatgtaccatgctcgtggagcttgtttcagtccat |
77 |
Q |
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| T |
1155020 |
ctttcagaaaatacgattctatacgaatgtaccatgctcgtggagcttgtttcagtccat |
1155079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 11850181 - 11850127
Alignment:
| Q |
342 |
ccacaagtcttgctttgtatttatctatttctccattctcattgagctttgtttt |
396 |
Q |
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|||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
11850181 |
ccactagtctcgccttgtacttatctatctctccattctcattgagcttagtttt |
11850127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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