View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_10 (Length: 532)
Name: NF11781_low_10
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 47532782 - 47532289
Alignment:
| Q |
19 |
atcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttccgccttcgctcttcatcgtcaacatttctacctcgttttt |
118 |
Q |
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| T |
47532782 |
atcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttccgccttcgctcttcatcgtcatcatttctacctcgttttt |
47532683 |
T |
|
| Q |
119 |
tatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacattactgtttgaaatttacatagagagtaaatatagccagac |
218 |
Q |
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| T |
47532682 |
tatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacattactgtttgaaatttacatagag--taaatatagccagac |
47532585 |
T |
|
| Q |
219 |
atagcattacattcaatataaaaatcttcaaacacatgcaagaagcaattttcacatacactactactattcttggttgattcacacgtgcattcatgtt |
318 |
Q |
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| T |
47532584 |
atagcattacattcaatataaaaatcttcaaacacatgcaagaagcaattttcacatacactgctactattcttggttgattcacacgtgcattcatgtt |
47532485 |
T |
|
| Q |
319 |
ccactaatatggagacacaagtggcaacaacaaagaaaacggttcaaaatcatggaataatgaattaaataatcattaatgataaaaggatattaaaagg |
418 |
Q |
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| T |
47532484 |
ccactaatatggagacacaagtggcaacaacaaagaaaacggttcaaaatcatggaataatgaattaaataatcattaatgataaaaggatattataagg |
47532385 |
T |
|
| Q |
419 |
atgtgatcgaattattacactggacgtgtaaaaaccagcagtgcaggagagagttcgattaggggttggaggaaacagttgtgactagggttgtaa |
514 |
Q |
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| T |
47532384 |
atgtgatcgaattattacactggacgtgtaaaaaccagcagtgcaggagagagttcgattaggggttggaggaaacagttgtgactagggttgtaa |
47532289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 39627189 - 39627100
Alignment:
| Q |
91 |
tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta |
180 |
Q |
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||||| ||| |||||||||| ||||| |||||||| ||||||||||||| ||||| ||||||| ||||||||| ||||| |||||||| |
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| T |
39627189 |
tcatcatcatcatttctaccacgtttattatttgaactaaacaagctagttgtcatacttgaaagtctgcattaatgtttaactacatta |
39627100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 39616467 - 39616378
Alignment:
| Q |
91 |
tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta |
180 |
Q |
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| T |
39616467 |
tcatcatcatcatttctaccacgctttttatttgaactaaacaagctagtcatcatatttgaaagtctgcattaatgttttactacatta |
39616378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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