View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11781_low_11 (Length: 523)

Name: NF11781_low_11
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11781_low_11
NF11781_low_11
[»] chr6 (12 HSPs)
chr6 (123-502)||(24190268-24190651)
chr6 (1-130)||(24192628-24192753)
chr6 (1-130)||(24191531-24191656)
chr6 (74-128)||(1072212-1072266)
chr6 (74-128)||(14507510-14507564)
chr6 (74-123)||(30729168-30729217)
chr6 (74-122)||(15541481-15541529)
chr6 (74-121)||(11983371-11983418)
chr6 (76-122)||(15533022-15533068)
chr6 (74-128)||(32279922-32279976)
chr6 (74-122)||(19227749-19227798)
chr6 (1-37)||(1072347-1072383)
[»] chr5 (14 HSPs)
chr5 (186-302)||(25908296-25908412)
chr5 (74-125)||(39797978-39798029)
chr5 (70-128)||(16776043-16776101)
chr5 (74-128)||(21947917-21947971)
chr5 (74-123)||(2174809-2174858)
chr5 (74-125)||(21684799-21684850)
chr5 (74-128)||(25921808-25921862)
chr5 (74-123)||(38881995-38882044)
chr5 (1-37)||(659725-659761)
chr5 (1-37)||(21947782-21947818)
chr5 (1-35)||(20504406-20504440)
chr5 (1-35)||(20507955-20507989)
chr5 (1-37)||(2818798-2818834)
chr5 (74-122)||(6756384-6756432)
[»] chr4 (21 HSPs)
chr4 (74-128)||(51015190-51015244)
chr4 (74-128)||(24888740-24888794)
chr4 (74-128)||(3824908-3824962)
chr4 (74-128)||(5198364-5198418)
chr4 (74-128)||(31849934-31849988)
chr4 (74-128)||(38409143-38409197)
chr4 (74-123)||(11434899-11434948)
chr4 (74-125)||(37089712-37089763)
chr4 (70-128)||(24878929-24878987)
chr4 (74-128)||(48486263-48486317)
chr4 (74-128)||(52942782-52942836)
chr4 (74-123)||(7941263-7941312)
chr4 (79-128)||(22044725-22044773)
chr4 (79-128)||(22047020-22047068)
chr4 (21-128)||(36921830-36921933)
chr4 (74-117)||(8756596-8756639)
chr4 (74-128)||(24880395-24880449)
chr4 (74-128)||(40091750-40091804)
chr4 (74-128)||(47274671-47274725)
chr4 (21-124)||(11008931-11009030)
chr4 (1-37)||(48486125-48486161)
[»] chr3 (23 HSPs)
chr3 (74-128)||(26720418-26720472)
chr3 (74-128)||(1321311-1321365)
chr3 (74-123)||(10084731-10084780)
chr3 (74-123)||(11170274-11170323)
chr3 (74-122)||(5191523-5191571)
chr3 (74-122)||(46966974-46967022)
chr3 (74-128)||(10191646-10191700)
chr3 (76-126)||(10958658-10958708)
chr3 (74-128)||(18162534-18162588)
chr3 (74-128)||(24979577-24979631)
chr3 (74-128)||(32264376-32264430)
chr3 (74-123)||(5522953-5523002)
chr3 (74-123)||(11163020-11163069)
chr3 (74-123)||(22114643-22114692)
chr3 (74-126)||(10956362-10956414)
chr3 (1-36)||(32218848-32218883)
chr3 (74-128)||(32218965-32219019)
chr3 (74-124)||(38889887-38889937)
chr3 (79-128)||(12268299-12268348)
chr3 (74-123)||(18097239-18097288)
chr3 (74-122)||(24177149-24177197)
chr3 (1-37)||(32264532-32264568)
chr3 (1-37)||(48362138-48362174)
[»] chr2 (15 HSPs)
chr2 (21-122)||(13910385-13910482)
chr2 (74-128)||(42064381-42064435)
chr2 (74-123)||(6264485-6264534)
chr2 (79-121)||(18800644-18800686)
chr2 (74-128)||(22407744-22407798)
chr2 (75-128)||(6259150-6259203)
chr2 (21-128)||(21521030-21521133)
chr2 (1-37)||(6259306-6259342)
chr2 (74-122)||(19504686-19504734)
chr2 (79-123)||(27104670-27104714)
chr2 (1-37)||(40032538-40032574)
chr2 (74-128)||(40032393-40032447)
chr2 (74-122)||(19502352-19502400)
chr2 (82-122)||(28462627-28462666)
chr2 (74-122)||(35107166-35107214)
[»] scaffold0131 (1 HSPs)
scaffold0131 (74-128)||(14918-14972)
[»] chr1 (16 HSPs)
chr1 (74-128)||(28840568-28840622)
chr1 (21-128)||(28842334-28842437)
chr1 (74-128)||(41646810-41646864)
chr1 (74-123)||(13761727-13761776)
chr1 (79-128)||(30790731-30790780)
chr1 (74-123)||(51749929-51749978)
chr1 (76-128)||(15823438-15823490)
chr1 (74-122)||(20302349-20302397)
chr1 (1-35)||(28207540-28207574)
chr1 (74-128)||(47451538-47451592)
chr1 (74-128)||(49687430-49687484)
chr1 (74-123)||(6823774-6823823)
chr1 (74-123)||(51752255-51752304)
chr1 (76-128)||(13214973-13215025)
chr1 (1-37)||(14098462-14098498)
chr1 (1-37)||(39462270-39462306)
[»] chr8 (7 HSPs)
chr8 (21-128)||(15072607-15072710)
chr8 (21-128)||(27826883-27826986)
chr8 (21-128)||(27829194-27829297)
chr8 (74-128)||(2468433-2468487)
chr8 (82-128)||(4423972-4424018)
chr8 (74-128)||(12517361-12517415)
chr8 (21-128)||(15067878-15067981)
[»] chr7 (6 HSPs)
chr7 (73-122)||(45366445-45366494)
chr7 (76-128)||(44466-44518)
chr7 (2-128)||(22392305-22392427)
chr7 (69-128)||(27306564-27306623)
chr7 (74-123)||(1049635-1049684)
chr7 (76-128)||(35531-35583)
[»] scaffold0068 (1 HSPs)
scaffold0068 (74-125)||(29060-29111)
[»] scaffold0250 (1 HSPs)
scaffold0250 (21-123)||(2730-2828)
[»] scaffold0339 (1 HSPs)
scaffold0339 (74-128)||(3896-3950)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 123 - 502
Target Start/End: Complemental strand, 24190651 - 24190268
Alignment:
Q  123 caatacatattttaggtttcggtacatgagtgaacttctgttattgaaagatattgaaagataaatattacattattttctaggttttcaaactactcta 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  24190651 caatacatattttaggtttcggtacacgagtgaacttctgttattgaaagatattaaaagataaatattacattattttctaggttttcgaactactcta 24190552  T
Q  223 tgtctgcttgtaccatatcctttaggttttagtacacgagtgaccttctgttattgaattattggttcttcatcttcttcttcgtctttttcttcattga 322  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  24190551 tgtctgcttgtaccacatcctttaggttttggtacacgagtgaacttctgttattgaattattggttcttcatcttcttggtcctctttttcttcattga 24190452  T
Q  323 agaggtggacaaacaaaagtctacaatgaagatcatctaaaaggggagccatcctaatttct----gatagatgatggtgccatctcagatgacgccatg 418  Q
    |||||| |||| ||||||||||||||| |||||||||| | | ||||||||| || ||| ||    ||| |||||||||| |||||||||||||||||||    
T  24190451 agaggtagacagacaaaagtctacaataaagatcatctgaga-gggagccattctgattcctaatggatggatgatggtgtcatctcagatgacgccatg 24190353  T
Q  419 caaagatgagaagtaagatataacattttttatattcattttcaatgtaaggtagattggaatttttttaaagta-gttagttat 502  Q
     |||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  24190352 taaaggtgagaagtaaagtataacattttttatattcattttcaatggaaggtagattcgaattttttaaaagtaggttagttat 24190268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24192753 - 24192628
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtg 100  Q
    |||||||||||||| | ||||||||||| |||||||| || |||||| |||| ||||||| | ||||||||   ||||||||||||||||||||||||||    
T  24192753 cttaaaatcaggttttacagaaatcgtgccacgatgggattgcaatgtggcatgatgggg-cgctggcagc---gaataacagaaacatatttttcagtg 24192658  T
Q  101 cagatttgtaccaaattttaagcaatacat 130  Q
    || |||||| ||||||||||||||||||||    
T  24192657 caaatttgttccaaattttaagcaatacat 24192628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24191656 - 24191531
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtg 100  Q
    |||||||||||||| | ||||||||||| |||||||| || |||||| || | ||||||| | ||||||||   ||||||||||||||||||||||||||    
T  24191656 cttaaaatcaggttttacagaaatcgtgccacgatgggattgcaatgtggtatgatgggg-cgctggcagc---gaataacagaaacatatttttcagtg 24191561  T
Q  101 cagatttgtaccaaattttaagcaatacat 130  Q
    || |||||| ||||||||||||||||||||    
T  24191560 caaatttgttccaaattttaagcaatacat 24191531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 1072266 - 1072212
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||| |||| |||||||  |||||||||||| ||||||||||||||||||    
T  1072266 cgaataacataaacgtatttttgggtgcagatttgttccaaattttaagcaatac 1072212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 14507564 - 14507510
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| |||| |||||||| ||||||||||||| ||||    
T  14507564 cgaaaaacagaaacatatttttgagtgtagatttgttccaaattttaagcgatac 14507510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 30729217 - 30729168
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  30729217 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 30729168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 15541529 - 15541481
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    |||||| |||||||||||||||  |||||||||||| ||||||||||||    
T  15541529 cgaatagcagaaacatatttttaggtgcagatttgttccaaattttaag 15541481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 11983418 - 11983371
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaa 121  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||||    
T  11983418 cgaaaaacagaaacatatttttgagtgcagatttgtttcaaattttaa 11983371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 15533068 - 15533022
Alignment:
Q  76 aataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    ||||| ||||||||||||||  |||||||||||| ||||||||||||    
T  15533068 aataagagaaacatatttttaggtgcagatttgttccaaattttaag 15533022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 32279922 - 32279976
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||| |||  ||||||| ||||||||||||| ||||||||||||| ||||    
T  32279922 cgaataacataaatgtatttttgagtgcagatttgttccaaattttaagcgatac 32279976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 19227798 - 19227749
Alignment:
Q  74 cgaataacagaaacatat-ttttcagtgcagatttgtaccaaattttaag 122  Q
    |||||||||||||||||| ||||  |||||||||||| ||||||||||||    
T  19227798 cgaataacagaaacatattttttgggtgcagatttgttccaaattttaag 19227749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1072383 - 1072347
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    ||||||||||||||||||||||||||||  |||||||    
T  1072383 cttaaaatcaggttctgcagaaatcgtggtacgatgg 1072347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 25908412 - 25908296
Alignment:
Q  186 aatattacattattttctaggttttcaaactactctatgtctgcttgtaccatatcctttaggttttagtacacgagtgaccttctgttattgaattatt 285  Q
    |||||||||||||||||||| ||||| |||||||  |||||||| ||||||| ||||||||||| ||   |||||||||  |||  ||  ||||| ||||    
T  25908412 aatattacattattttctagtttttctaactacttcatgtctgcatgtaccacatcctttaggtattgacacacgagtggactttcgtcgttgaactatt 25908313  T
Q  286 ggttcttcatcttcttc 302  Q
    |||||||||||||||||    
T  25908312 ggttcttcatcttcttc 25908296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 39797978 - 39798029
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaa 125  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  39797978 cgaataacagaaacatatttttgggtgcagatttgttccaaattttaagcaa 39798029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 16776043 - 16776101
Alignment:
Q  70 gcatcgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||| ||||||||||||||||| |||| |||||||| ||||||||||||| ||||    
T  16776043 gcatcgaaaaacagaaacatatttttgagtgaagatttgttccaaattttaagcgatac 16776101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 21947917 - 21947971
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||    
T  21947917 cgaataacagaaacatatttttgggtgcagatttgttccaaattttaagcgatac 21947971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 2174809 - 2174858
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  2174809 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagc 2174858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 21684850 - 21684799
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaa 125  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||||||||    
T  21684850 cgaaaaacagaaacatatttttgagtgcagatttgttacaaattttaagcaa 21684799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 25921862 - 25921808
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||||||| ||||    
T  25921862 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagcgatac 25921808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 38881995 - 38882044
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  38881995 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 38882044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 659725 - 659761
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  659725 cttaaaatcaggttctgcagaaatcgtggcacgatgg 659761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21947782 - 21947818
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  21947782 cttaaaatcaggttctgcagaaatcgtggcacgatgg 21947818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20504440 - 20504406
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgat 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  20504440 cttaaaatcaggttctgcagaaatcgtggcacgat 20504406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20507989 - 20507955
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgat 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  20507989 cttaaaatcaggttctgcagaaatcgtggcacgat 20507955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2818834 - 2818798
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  2818834 cttaaaattaggttctgcagaaatcgtggcacgatgg 2818798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 6756384 - 6756432
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    |||||||||||||| |||||||  |||||||||| | ||||||||||||    
T  6756384 cgaataacagaaacgtattttttggtgcagatttattccaaattttaag 6756432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 51015190 - 51015244
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  51015190 cgaataacagaaacatatttttcagtgcagatttgttccaaattttaagcgatac 51015244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 24888740 - 24888794
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  24888740 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagcaatac 24888794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 3824962 - 3824908
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||||||||||||    
T  3824962 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagcaatac 3824908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 5198364 - 5198418
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  5198364 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagcgatac 5198418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 31849988 - 31849934
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  31849988 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagcgatac 31849934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 38409143 - 38409197
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  38409143 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagcgatac 38409197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 11434899 - 11434948
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  11434899 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagc 11434948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 37089763 - 37089712
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaa 125  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||||    
T  37089763 cgaataacagaaacgtatttttaggtgcagatttgttccaaattttaagcaa 37089712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 24878929 - 24878987
Alignment:
Q  70 gcatcgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||||||| |||||||  ||||| |||||| ||||||||||||| ||||    
T  24878929 gcatcgaataacagaaacgtatttttgggtgcatatttgttccaaattttaagcgatac 24878987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 48486263 - 48486317
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||||||| ||||    
T  48486263 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagcgatac 48486317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 52942836 - 52942782
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||||| |||||    
T  52942836 cgaataacataaacatattttttggtgcagatttgttccaaattttaagtaatac 52942782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 7941263 - 7941312
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  7941263 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 7941312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 22044773 - 22044725
Alignment:
Q  79 aacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  22044773 aacagaaacatattttt-agtgcagatttgttccaaattttaagcgatac 22044725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 22047068 - 22047020
Alignment:
Q  79 aacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  22047068 aacagaaacatattttt-agtgcagatttgttccaaattttaagcgatac 22047020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 36921933 - 36921830
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| ||||||||  ||||| || |||||||||| | || |||||||   ||||||||||||| |||||||   ||||||||||| ||||||||||    
T  36921933 aaatcgtggcacgatggggtcgcattgtggcacgatggtg-cattggcagc---gaataacagaaacgtatttttggatgcagatttgttccaaatttta 36921838  T
Q  121 agcaatac 128  Q
    ||| ||||    
T  36921837 agcgatac 36921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 8756639 - 8756596
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaatt 117  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  8756639 cgaataacagaaacatatttctcggtgcagatttgttccaaatt 8756596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 24880395 - 24880449
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||   ||||||||||| ||||||||||||| ||||    
T  24880395 cgaataacagaaacgtatttttggatgcagatttgttccaaattttaagcgatac 24880449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 40091804 - 40091750
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||  |||| |||||||||||||| |||||| ||||||||||||| ||||    
T  40091804 cgaataacgtaaacgtatttttcagtgcatatttgttccaaattttaagcgatac 40091750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 47274671 - 47274725
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||| |||| |||||||  ||||||||||||  |||||||||||||||||    
T  47274671 cgaataacataaacgtatttttgggtgcagatttgtttcaaattttaagcaatac 47274725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 11009030 - 11008931
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| ||||||||  |||||  | |||||||||| | |||||||||||   || |||||||||||||||||  ||||||||||||  || ||||||    
T  11009030 aaatcgtggcacgatggggtcgcatcgtggcacgatggtg-cactggcagca---aaaaacagaaacatatttttgggtgcagatttgttacagatttta 11008935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48486125 - 48486161
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  48486125 cttaaaatcaggtcctgcagaaatcgtggcacgatgg 48486161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 26720418 - 26720472
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  26720418 cgaaaaacagaaacatattttttagtgcagatttgttccaaattttaagcaatac 26720472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 1321311 - 1321365
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  1321311 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagcgatac 1321365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 10084780 - 10084731
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  10084780 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagc 10084731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 11170274 - 11170323
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  11170274 cgaataacagaaacatatttttgggtgcagatttgttccaaattttaagc 11170323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 5191523 - 5191571
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  5191523 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaag 5191571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 46967022 - 46966974
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  46967022 cgaaaaacagaaacatatttttcaatgcagatttgttccaaattttaag 46966974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 10191700 - 10191646
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| |||||| |||||| ||||||||||||| ||||    
T  10191700 cgaaaaacagaaacatatttttgagtgcaaatttgttccaaattttaagcgatac 10191646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 10958708 - 10958658
Alignment:
Q  76 aataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaat 126  Q
    |||||||||||| |||||||  |||||||||||| ||||||||||||||||    
T  10958708 aataacagaaacgtatttttaggtgcagatttgttccaaattttaagcaat 10958658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 18162534 - 18162588
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||||||| ||||    
T  18162534 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagcgatac 18162588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 24979577 - 24979631
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||||| |||||    
T  24979577 cgaataacataaacatattttttggtgcagatttgttccaaattttaagtaatac 24979631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 32264430 - 32264376
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||||||||||||||||  ||||||||||||  |||||||||||| ||||    
T  32264430 cgaataacagaaacatatttttgggtgcagatttgtttcaaattttaagcgatac 32264376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 5523002 - 5522953
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||||||    
T  5523002 cgaaaaacagaaacatatttttgagtgcagatttgtttcaaattttaagc 5522953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 11163020 - 11163069
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  11163020 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 11163069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 22114692 - 22114643
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  22114692 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 22114643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 10956414 - 10956362
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaat 126  Q
    ||||||||| |||| |||||||  |||||||||||| ||||||||||||||||    
T  10956414 cgaataacataaacgtatttttaggtgcagatttgttccaaattttaagcaat 10956362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32218848 - 32218883
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatg 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  32218848 cttaaaatcaggttctgcagaaatcgtggcacgatg 32218883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 32218965 - 32219019
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||| |||||| |||||||  |||||||||||| |||||||||||| |||||    
T  32218965 cgaataagagaaacgtatttttgggtgcagatttgttccaaattttaagtaatac 32219019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 38889887 - 38889937
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagca 124  Q
    ||||||||||||||||||||||  ||||||||||||  || ||||||||||    
T  38889887 cgaataacagaaacatatttttgggtgcagatttgttacagattttaagca 38889937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 12268348 - 12268299
Alignment:
Q  79 aacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||| || |||||||||||||| |||||| ||||||||||||| ||||    
T  12268348 aacagagacgtatttttcagtgcaaatttgttccaaattttaagcgatac 12268299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 18097288 - 18097239
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  ||||||||||||  ||||||||||||    
T  18097288 cgaataacagaaacgtatttttgggtgcagatttgtttcaaattttaagc 18097239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 24177149 - 24177197
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    |||| |||| |||| ||||||| ||||||||||||| ||||||||||||    
T  24177149 cgaaaaacataaacgtatttttaagtgcagatttgttccaaattttaag 24177197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32264568 - 32264532
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  32264568 cttaaaatcaggttttgcagaaatcgtggcacgatgg 32264532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48362174 - 48362138
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  48362174 cttaaaatcaggttctgtagaaatcgtggcacgatgg 48362138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 13910482 - 13910385
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| ||||||||  ||||| || |||||||||| | | ||||||||   ||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  13910482 aaatcgtggcacgatggggtcgcattgtggcacgatggtg-cgctggcagc---gaaaaacagaaacatatttttgagtgcagatttgttccaaatttta 13910387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 42064381 - 42064435
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  42064381 cgaaaaacagaaacatattttttagtgcagatttgttccaaattttaagcgatac 42064435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 6264534 - 6264485
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  6264534 cgaataacagaaacatatttttgggtgcagatttgttccaaattttaagc 6264485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 18800686 - 18800644
Alignment:
Q  79 aacagaaacatatttttcagtgcagatttgtaccaaattttaa 121  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  18800686 aacagaaacatatttttaagtgcagatttgttccaaattttaa 18800644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 22407798 - 22407744
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||  |||||||||||| | ||||||||||||||||    
T  22407798 cgaataacagaaacgtatttttgggtgcagatttgttcaaaattttaagcaatac 22407744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 6259203 - 6259150
Alignment:
Q  75 gaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||||||||||  ||||||| |||| ||||||||||||| ||||    
T  6259203 gaataacagaaacatatttttgggtgcagacttgttccaaattttaagcgatac 6259150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 21521133 - 21521030
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| |||||||| ||||||| | |||||||||| | | ||||||||   |||||||| |||| |||||||  |||||||||||| ||||| ||||    
T  21521133 aaatcgtgccacgatgggatcgcaacgtggcacgatggtg-cgctggcagc---gaataacataaacgtatttttgggtgcagatttgttccaaaattta 21521038  T
Q  121 agcaatac 128  Q
    ||| ||||    
T  21521037 agcgatac 21521030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6259342 - 6259306
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  6259342 cttaaaatcaggttctgcagaaatcgtggcacgatgg 6259306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 19504734 - 19504686
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    ||||||||||||||| ||||||  |||||||||||| ||||||||||||    
T  19504734 cgaataacagaaacacatttttaggtgcagatttgttccaaattttaag 19504686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 27104670 - 27104714
Alignment:
Q  79 aacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||    
T  27104670 aacataaacatatttttgagtgcagatttgttccaaattttaagc 27104714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40032574 - 40032538
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  40032574 cttaaaatcaggttctgcagaaatcgtggcacgatgg 40032538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 40032447 - 40032393
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||  |||||||||||| |||| |||||||| ||||    
T  40032447 cgaataacagaaacgtatttttgggtgcagatttgttccaagttttaagcgatac 40032393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 19502400 - 19502352
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    ||||||||||||||||||||||   ||||||||||  ||||||||||||    
T  19502400 cgaataacagaaacatatttttggttgcagatttgatccaaattttaag 19502352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 28462666 - 28462627
Alignment:
Q  82 agaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  28462666 agaaacatatttt-cagtgcagatttgttccaaattttaag 28462627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 35107166 - 35107214
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    ||||||||| || | ||||||||| ||||||||||| ||||||||||||    
T  35107166 cgaataacataatcgtatttttcaatgcagatttgttccaaattttaag 35107214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 14918 - 14972
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||    
T  14918 cgaataacagaaacatatttttgggtgcagatttgttccaaattttaagcgatac 14972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 28840568 - 28840622
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  28840568 cgaaaaacagaaacatatttttgagtgcagatttgttccaaattttaagcgatac 28840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 28842334 - 28842437
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   ||| ||||||||||||||||| |||||| |||||| ||||||||||    
T  28842334 aaatcgtggcacgatgggatcgcatcgtggcacgatggtgtc-ctggcagc---gaaaaacagaaacatatttttgagtgcaaatttgttccaaatttta 28842429  T
Q  121 agcaatac 128  Q
    ||| ||||    
T  28842430 agcgatac 28842437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 41646810 - 41646864
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||||||||||||||||   ||||||||||| ||||||||||||| ||||    
T  41646810 cgaataacagaaacatatttttggatgcagatttgttccaaattttaagcgatac 41646864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 13761727 - 13761776
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  13761727 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 13761776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 30790780 - 30790731
Alignment:
Q  79 aacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||| ||||    
T  30790780 aacataaacgtatttttcagtgcagatttgttccaaattttaagcgatac 30790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 51749929 - 51749978
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  51749929 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 51749978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 15823438 - 15823490
Alignment:
Q  76 aataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||| ||||    
T  15823438 aataacagaaacatatttttggatgcagatttgttccaaattttaagcgatac 15823490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 20302349 - 20302397
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    ||||||||||||||||||||||  ||||| |||||| ||||||||||||    
T  20302349 cgaataacagaaacatatttttgggtgcatatttgttccaaattttaag 20302397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28207574 - 28207540
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgat 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  28207574 cttaaaatcaggttctgcagaaatcgtggcacgat 28207540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 47451538 - 47451592
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| |||||||  |||||||||||| |||||| |||||| ||||    
T  47451538 cgaataacagaaacgtattttttggtgcagatttgttccaaatattaagcgatac 47451592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 49687430 - 49687484
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||| |||| |||||||  |||||||||||| ||||||||||||| ||||    
T  49687430 cgaataacataaacgtatttttgggtgcagatttgttccaaattttaagcgatac 49687484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 6823774 - 6823823
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    ||||||||| |||| |||||||  |||||||||||| |||||||||||||    
T  6823774 cgaataacataaacgtatttttgggtgcagatttgttccaaattttaagc 6823823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 51752255 - 51752304
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    ||||||||| |||| |||||||  |||||||||||| |||||||||||||    
T  51752255 cgaataacataaacgtatttttgggtgcagatttgttccaaattttaagc 51752304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 13214973 - 13215025
Alignment:
Q  76 aataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||| |||| |||||||  |||||||||||| ||||||||||||| ||||    
T  13214973 aataacaaaaacgtatttttgggtgcagatttgttccaaattttaagcgatac 13215025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14098498 - 14098462
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  14098498 cttaaaatcagattctgcagaaatcgtggcacgatgg 14098462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39462270 - 39462306
Alignment:
Q  1 cttaaaatcaggttctgcagaaatcgtgtcacgatgg 37  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  39462270 cttaaaatcaggttctgcagaaatcgtgacacaatgg 39462306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 15072607 - 15072710
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    ||||||||||||||||| ||||||| | |||| ||||| | | ||||||||   ||||||||||||| |||||||  ||||| |||||| ||||||||||    
T  15072607 aaatcgtgtcacgatgggatcgcaacgtggcatgatggtg-cgctggcagc---gaataacagaaacgtatttttgggtgcaaatttgttccaaatttta 15072702  T
Q  121 agcaatac 128  Q
    ||| ||||    
T  15072703 agcgatac 15072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 27826883 - 27826986
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   ||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  27826883 aaatcgtggcacgatgggatcgcatcgtggcacgatggtg-cgctggcagc---gaaaaacaaaaacatatttttgagtgcagatttgttccaaatttta 27826978  T
Q  121 agcaatac 128  Q
    ||| ||||    
T  27826979 agcgatac 27826986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 27829194 - 27829297
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   ||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  27829194 aaatcgtggcacgatgggatcgcatcgtggcacgatggtg-cgctggcagc---gaaaaacaaaaacatatttttgagtgcagatttgttccaaatttta 27829289  T
Q  121 agcaatac 128  Q
    ||| ||||    
T  27829290 agcgatac 27829297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 2468487 - 2468433
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| ||||||| ||||||||||||| |||||| |||||| ||||    
T  2468487 cgaataacagaaacgtattttttagtgcagatttgttccaaatgttaagcgatac 2468433  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 4423972 - 4424018
Alignment:
Q  82 agaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  4423972 agaaacatatttttgagtgcagatttgttccaaattttaagcgatac 4424018  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 12517415 - 12517361
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||||||||||||| |||||| |||||| ||||||||||||| ||||    
T  12517415 cgaaaaacagaaacatatttttgagtgcaaatttgttccaaattttaagcgatac 12517361  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 15067878 - 15067981
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    ||||| || |||||||| ||||||| | |||||||||| | | ||||||||   |||||||| |||| |||||||  |||||||||||| ||||||||||    
T  15067878 aaatcatgccacgatgggatcgcaacgtggcacgatggtg-cgctggcagc---gaataacaaaaacgtatttttgggtgcagatttgttccaaatttta 15067973  T
Q  121 agcaatac 128  Q
    ||| ||||    
T  15067974 agcgatac 15067981  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 45366445 - 45366494
Alignment:
Q  73 tcgaataacagaaacatatttttcagtgcagatttgtaccaaattttaag 122  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  45366445 tcgaaaaacagaaacgtatttttcagtgcagatttgttccaaattttaag 45366494  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 44466 - 44518
Alignment:
Q  76 aataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||||| ||||    
T  44466 aataacataaacatatttttgggtgcagatttgtaccaaattttaagcgatac 44518  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 22392305 - 22392427
Alignment:
Q  2 ttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgc 101  Q
    ||||||||||||| || |||||||||| |||||||| ||||||| | || ||||||| | | ||||  |||   || ||||||||  |||||||||||||    
T  22392305 ttaaaatcaggttatggagaaatcgtgccacgatgggatcgcaacgtggtacgatggtg-cgctggaggca---aaaaacagaaatgtatttttcagtgc 22392400  T
Q  102 agatttgtaccaaattttaagcaatac 128  Q
    |||||||| ||||||| ||||| ||||    
T  22392401 agatttgttccaaattgtaagcgatac 22392427  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 27306623 - 27306564
Alignment:
Q  69 agcatcgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| |||||||||||||| |||||||  |||||||||||| ||||||||||||| ||||    
T  27306623 agcagcgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagcgatac 27306564  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 1049684 - 1049635
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagc 123  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||||    
T  1049684 cgaataacagaaacgtatttttgggtgcagatttgttccaaattttaagc 1049635  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 35531 - 35583
Alignment:
Q  76 aataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    |||| ||||||| |||||||  |||||||||||| ||||||||||||| ||||    
T  35531 aatagcagaaacgtatttttgggtgcagatttgttccaaattttaagcgatac 35583  T

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Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 29060 - 29111
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaa 125  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||||||||    
T  29060 cgaaaaacagaaacatatttttgagtgcagatttgttacaaattttaagcaa 29111  T

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Target: scaffold0250 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 2730 - 2828
Alignment:
Q  21 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttta 120  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   |||||||| |||| |||||||  |||||||||||| ||||||||||    
T  2730 aaatcgtggcacgatgggatcgcatcgtggcacgatggtg-cgctggcagc---gaataacataaacgtatttttgggtgcagatttgttccaaatttta 2825  T

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Target: scaffold0339 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 3896 - 3950
Alignment:
Q  74 cgaataacagaaacatatttttcagtgcagatttgtaccaaattttaagcaatac 128  Q
    ||||||||| |||| |||||||  ||||||||||||  |||||||||||||||||    
T  3896 cgaataacataaacgtatttttgggtgcagatttgtttcaaattttaagcaatac 3950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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