View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_14 (Length: 471)
Name: NF11781_low_14
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 56232878 - 56232432
Alignment:
| Q |
16 |
cagagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggc |
115 |
Q |
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| T |
56232878 |
cagagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggc |
56232779 |
T |
|
| Q |
116 |
acgatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttatgagtgttgtcccttgtcctagct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
56232778 |
acgatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttgtgagtgttgtcccttgtcctagct |
56232679 |
T |
|
| Q |
216 |
gaaagaaaacacatcatattatcagatagagtaattctcaatgaatcatataataattccatgagtaacctaacggtgttaggtaacttaccagttgtca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232678 |
gaaagaaaacacatcatattatcagatagagtaattctcaatgaatcatatcataattccatgagtaacctaacggtgttaggtaacttaccagttgtca |
56232579 |
T |
|
| Q |
316 |
tgattgcagatttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccaga |
415 |
Q |
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| T |
56232578 |
tgattgcagatttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccaga |
56232479 |
T |
|
| Q |
416 |
catggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgg |
462 |
Q |
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| T |
56232478 |
catggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgg |
56232432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 431
Target Start/End: Original strand, 42761220 - 42761348
Alignment:
| Q |
303 |
ttaccagttgtcatgattgcagatttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgaca |
402 |
Q |
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||||| || ||||||||||| || || ||||| | ||||||||| | || |||| || ||||| || ||||||| ||| || |||||||||||||||| |
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| T |
42761220 |
ttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggacatgaca |
42761319 |
T |
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| Q |
403 |
tggatgttccagacatggtaatgaaagga |
431 |
Q |
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| || || || ||||| ||||| |||||| |
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| T |
42761320 |
tcgaagtgcctgacatagtaataaaagga |
42761348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39190823 - 39190602
Alignment:
| Q |
18 |
gagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggcac |
117 |
Q |
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|||||||| ||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
39190823 |
gagaacatgctaatttgtgtttggttataacctaagaaacaaagaaagtttatgtaatcattgatgtttaactcatacaccaaaccaggatccatggcac |
39190724 |
T |
|
| Q |
118 |
gatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttatgagtgttgtcccttgtcctagctga |
217 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
39190723 |
gatttggtcttatgtgaccagaaccgtagtcaaatggtgttgccttgacattaatatcatcaacgataggtttaacagtgttgtcccttgtcctagctga |
39190624 |
T |
|
| Q |
218 |
aagaaaacacatcatattatca |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39190623 |
aagaaaacacatcatattatca |
39190602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 260 - 462
Target Start/End: Complemental strand, 39190449 - 39190247
Alignment:
| Q |
260 |
atcatataataattccatgagtaacctaacggtgttaggtaacttaccagttgtcatgattgcagatttaatagcggatggactccagttggggtggaga |
359 |
Q |
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||||||| || ||| ||||||||| |||| | ||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
39190449 |
atcatatcatcatttcatgagtaatctaatgatgttacattacttaccagttgtcatgattgcagatttaatagctgatggactccaggtggggtggaga |
39190350 |
T |
|
| Q |
360 |
gtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctg |
459 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||| || |
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| T |
39190349 |
gtcttaagaaggccaacgactccagccacatgagggcatgacatggatgttccagacattgtcatgaaaggaaccctacgtttatcagaatccaattttg |
39190250 |
T |
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| Q |
460 |
tgg |
462 |
Q |
| |
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||| |
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|
| T |
39190249 |
tgg |
39190247 |
T |
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