View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11781_low_17 (Length: 425)

Name: NF11781_low_17
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11781_low_17
NF11781_low_17
[»] chr5 (4 HSPs)
chr5 (14-412)||(6944807-6945206)
chr5 (274-350)||(5963394-5963470)
chr5 (269-318)||(6593177-6593226)
chr5 (268-309)||(29845050-29845091)
[»] chr7 (3 HSPs)
chr7 (270-310)||(31002954-31002994)
chr7 (279-328)||(7612346-7612395)
chr7 (276-328)||(32156893-32156945)
[»] chr3 (1 HSPs)
chr3 (276-310)||(48387457-48387491)
[»] chr4 (1 HSPs)
chr4 (268-305)||(19039657-19039694)
[»] chr2 (1 HSPs)
chr2 (279-348)||(9833042-9833111)
[»] chr8 (1 HSPs)
chr8 (268-304)||(31751714-31751750)
[»] chr1 (2 HSPs)
chr1 (270-318)||(34404930-34404978)
chr1 (266-346)||(37841873-37841952)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 6945206 - 6944807
Alignment:
Q  14 gacatcaaatgccgtccataatatcccctgacctatttcaaatttcagatattnnnnnnntataatacgatttcatttcatcaattaatattcttgaata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  6945206 gacatcaaatgccgtccataatatcccctgacctatttcaaatttcagatattaaaaaaatataatacgatttcatttcatcaattaatattcttgaata 6945107  T
Q  114 tatgaaaatgcataatttgacaacctgcactaaataattgcatgctccttttgaaaataaaatgtctataatcaagcaattaagcagatcaacttcaacc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  6945106 tatgaaaatgcataatttgacaacctgcactaaataattgcatgctccttttgaaaataaaatgtctataatcaagcaattaagcaggtaaacttcaacc 6945007  T
Q  214 attcctagcatggaattagccaaaacaagacaataacatcttactgt-ctggatagccctgtctggataaacaacttaatttgcatcttataacataatc 312  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6945006 attcctagcacggaattagccaaaacaagacgataacatcttactgtagtggatagacctgtctggataaacaacttaatttgcatcttataacataatc 6944907  T
Q  313 acttattattataagcactaatgtaaaatctatttctaaattctataagttaaattttttcgcatagctattagttatctagaagagcttatgaaaaaag 412  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944906 acttatcattataagcactaatgtaaaatctatttctaaattctataagttaaattttttcgcatagctattagttatctagaagagcttatgaaaaaag 6944807  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 5963470 - 5963394
Alignment:
Q  274 tctggataaacaacttaatttgcatcttataacataatcacttattattataagcactaatgtaaaatctatttcta 350  Q
    ||||||||||||||||||||||||  ||||| ||||| || |||| || |||||| || ||||| || |||||||||    
T  5963470 tctggataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttcta 5963394  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 6593177 - 6593226
Alignment:
Q  269 ccctgtctggataaacaacttaatttgcatcttataacataatcacttat 318  Q
    |||||| ||||||||||||||||||| || |||||| |||||||| ||||    
T  6593177 ccctgtttggataaacaacttaatttacagcttatagcataatcatttat 6593226  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 29845091 - 29845050
Alignment:
Q  268 gccctgtctggataaacaacttaatttgcatcttataacata 309  Q
    ||||||| |||||||||||||||||||||| |||||| ||||    
T  29845091 gccctgtttggataaacaacttaatttgcaacttatagcata 29845050  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 31002994 - 31002954
Alignment:
Q  270 cctgtctggataaacaacttaatttgcatcttataacataa 310  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  31002994 cctgtttggataaacaacttaatttgcatcttatagcataa 31002954  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 7612346 - 7612395
Alignment:
Q  279 ataaacaacttaatttgcatcttataacataatcacttattattataagc 328  Q
    ||||||||||||||||||| |||||| ||||| ||||||| || ||||||    
T  7612346 ataaacaacttaatttgcagcttatagcataagcacttatcatgataagc 7612395  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 32156893 - 32156945
Alignment:
Q  276 tggataaacaacttaatttgcatcttataacataatcacttattattataagc 328  Q
    |||||||||||||||||||||| |||||| ||||| | ||||| | |||||||    
T  32156893 tggataaacaacttaatttgcagcttatagcataaacgcttatcagtataagc 32156945  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 48387491 - 48387457
Alignment:
Q  276 tggataaacaacttaatttgcatcttataacataa 310  Q
    ||||||||||||||| |||||||||||||||||||    
T  48387491 tggataaacaacttattttgcatcttataacataa 48387457  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 19039657 - 19039694
Alignment:
Q  268 gccctgtctggataaacaacttaatttgcatcttataa 305  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  19039657 gccctgtttggataaacaacttaatttgcagcttataa 19039694  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 9833042 - 9833111
Alignment:
Q  279 ataaacaacttaatttgcatcttataacataatcacttattattataagcactaatgtaaaatctatttc 348  Q
    |||||||||||||||| || |||||| ||||| || |||| || |||| |||| ||||| ||||||||||    
T  9833042 ataaacaacttaatttacagcttatagcataagcatttatcatgataaacacttatgtataatctatttc 9833111  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 31751750 - 31751714
Alignment:
Q  268 gccctgtctggataaacaacttaatttgcatcttata 304  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  31751750 gccctgtttggataaacaacttaatttgcagcttata 31751714  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 34404930 - 34404978
Alignment:
Q  270 cctgtctggataaacaacttaatttgcatcttataacataatcacttat 318  Q
    ||||| |||||||||||||||||||| | |||||||| ||| |||||||    
T  34404930 cctgtttggataaacaacttaatttgaagcttataacgtaagcacttat 34404978  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 37841873 - 37841952
Alignment:
Q  266 tagccctgtctggataaacaacttaatttgcatcttataacataatcacttattattataagcactaatgtaaaatctatt 346  Q
    ||||||||| ||| |||||||||||||||||| || ||| ||||| ||||||| || ||||| ||| ||||| || |||||    
T  37841873 tagccctgtttgg-taaacaacttaatttgcagctaatagcataagcacttatcatgataagtactcatgtataagctatt 37841952  T

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