View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_18 (Length: 397)
Name: NF11781_low_18
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 26363971 - 26364328
Alignment:
| Q |
1 |
agaaaaatgaatctatcaacagaaaagcagagtacaaaaacaaccaaaatggatcttattgaagactaattcaccaatcaatggtctgaaaaaggcccaa |
100 |
Q |
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|||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26363971 |
agaaaaatgaatctattaacataaaagcagaatacaaaaacaaccaaaatggatcttattgaagactaattcaccaatcaatggtctgaaaaaggcccaa |
26364070 |
T |
|
| Q |
101 |
ctataaagcaatgctttgaagctaacgaagaagcacaagtatatttgnnnnnnnnt--ggtagtacaagattctattcatcataaaatcataatatttta |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26364071 |
ctataaagcaatgctttgaagctaacgaagaagcacaagtatatttgaaaaaaaatatggtagtacaagattctattcatcataaaatcataatatttta |
26364170 |
T |
|
| Q |
199 |
catcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacactttcatcattcccgagttacaaaatgaagatgctaatgaattccat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26364171 |
catcagaattcagaatcacaaacttcttatgcgattaaatgtctcagccgacactttcatcattcccgagttacaaaatgaagatgctaatgaattccat |
26364270 |
T |
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| Q |
299 |
acagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagctt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
26364271 |
acagaaatttcaggaagctttccttggcttatcatgtcttccaaccacataagagctt |
26364328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 26366519 - 26366899
Alignment:
| Q |
1 |
agaaaaatgaatctatcaacagaaaagcagagtacaaaaacaaccaaaatggatcttattgaagactaattcaccaa-tcaatggtctgaaaaaggccca |
99 |
Q |
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||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |
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| T |
26366519 |
agaaaaatgaaactttcaacagaaaagcaaagtacaaaa-caaccaaaatggatcttattgaagactaattcaccaaatcaatggtctggaaaaggccaa |
26366617 |
T |
|
| Q |
100 |
actataaagcaatgctttgaagctaacgaagaagcacaagtatatttgnnnnnnnntggtagtacaagattctattcatcataaaatcataatattttac |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
26366618 |
actataaagcaatgctttaaagctaacgaagaagcatgagtatatttgaaaaaaaatagtagttcaagattctattcattataaaatcataatattttac |
26366717 |
T |
|
| Q |
200 |
atcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacactttcatcattcccgagttacaaaatgaagatgctaatgaattccata |
299 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
26366718 |
atcagaatccagaatcacaaactttttatgcgattaaatgtctcagcagacactttcatcatccccgagttacaaaatgaagatgctaatgaattccaaa |
26366817 |
T |
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| Q |
300 |
cagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagcttcatattgcctacctaaggagcaaag |
381 |
Q |
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| T |
26366818 |
cagaaatttcaggaagctttccttggcttatcatgtcctctaaccacataacagcttcatattgcctacctaaggaacaaag |
26366899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 21055412 - 21055022
Alignment:
| Q |
1 |
agaaaaatgaatctatcaacagaaaagcaga------gtacaaaaacaaccaaaatggatcttattgaagactaattcaccaa-tcaatggtctgaaaaa |
93 |
Q |
| |
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|||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |||| |
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| T |
21055412 |
agaaaaatgaatctatcaacagaaaaagaaaaaaaaagtacaaaaacagccaaaatggatcttagtgaagactgattcaccaaatcaatggtctggaaaa |
21055313 |
T |
|
| Q |
94 |
ggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttgnnnnnnnn----tggtagtacaagattctattcatcataaaatcat |
189 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||| | ||| ||||||||||||||||| |||||||||| |
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| T |
21055312 |
ggcc-aactataaagcaatgctttaaagctaatgaagaagcataagtatatttgaaagaaaaaaaatagtaatacaagattctattcattataaaatcat |
21055214 |
T |
|
| Q |
190 |
aatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacactttcatcattcccgagttacaaaatgaagatgctaat |
289 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
21055213 |
attattttacatcagaattcagaatcacaaacttcttatacgatcaaatgtctcagtagacactttcatcatccctgagttacaaaatgaagatgctaat |
21055114 |
T |
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| Q |
290 |
gaattccatacagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagcttcatattgcctacctaaggagcaaag |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055113 |
gaattccatacagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagcttcatattgcctacctaaggagcaaag |
21055022 |
T |
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