View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_19 (Length: 385)
Name: NF11781_low_19
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 39285900 - 39286249
Alignment:
| Q |
18 |
gttacttcaagttggaacgtaatgtgaaaaagagcaatacaggaaagtgtggaattgcaatgcaagcctcatacccagtgaagtatggtcaaaattcagc |
117 |
Q |
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| T |
39285900 |
gttacttcaagttggaacgtaatgtgaaaaagatcaatacaggaaagtgtggaattgcaatgcaagcctcatacccagtgaagtatggtcaaaattcagc |
39285999 |
T |
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| Q |
118 |
ttatgaaaacaatgaagtgcttgttagcagtgcttgaaacaccaccaacagtatctcaagtgttaaatattcctattgaattatatatgcttattggttt |
217 |
Q |
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| T |
39286000 |
ttatgaaaacaatgaagagcttgttagcagtgcttgaaacaccaccaacagtatctcaagtgttaaatattcctattgaattatatatgcttattggttt |
39286099 |
T |
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| Q |
218 |
aatattgtaaatagagtattactattttctttacgtgaaagctgcacctaccagctttcactactgttatttgatttcaatgtttaatttgaattgattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286100 |
aatattgtaaatagagtattactattttctttacgtgaaagctgcacctaccagctttcactactgttatttgatttcaatgtttaatttgaattgattt |
39286199 |
T |
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| Q |
318 |
caacttgctagttatattgtggatttatatagatttttgccaacaccctg |
367 |
Q |
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| T |
39286200 |
caacttgctagttatattgtggatttatatagatttttgccaacaccctg |
39286249 |
T |
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