View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_2 (Length: 859)
Name: NF11781_low_2
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 50 - 580
Target Start/End: Original strand, 20969399 - 20969926
Alignment:
| Q |
50 |
aattttcaggatgaatcattcattgctgatatctcagtgccggtttcctgccttattgcagtcacaagcaaggagtaagcctgctggcaccgtacttcat |
149 |
Q |
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| T |
20969399 |
aattttcaggatgaatcattcattgctgatatcttggtgccggtttcctgccttattgcagtcacaagcaaggagtaagcctgctggcaccgt----cat |
20969494 |
T |
|
| Q |
150 |
ccagaataataaac-tggcattagaaccattctgttcaaaatctttcttaattaaactcagttcttaatatagcaagaagtgtcgatggcctcaacccaa |
248 |
Q |
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|||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20969495 |
ccagaataataaacctgtcattagaaacattctgttcaaaatctttcttaattaaactcagttcttgatatagcaagaagtgtcgatggcctcaacccaa |
20969594 |
T |
|
| Q |
249 |
gagtattgttcaatattgccttcatttagaagtgttctagccatttattacaaagatctannnnnnnctttcaacaatgatccattt-gttgaagagttc |
347 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |
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| T |
20969595 |
gagtatttttcaatattgccttcatttagaagtgttctagccatttattacaaagatctatttttt-ctttcaacaacgatccattttgttgaagagttc |
20969693 |
T |
|
| Q |
348 |
tccggcaggaaaaattatgagaaatgtcattctcatcaaaagaatgtcttgacggattcattttcaaactttcctctatgaccactccttacaatgataa |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
20969694 |
tccggcaggaaaaattatgagaaatgtcattctcatcaaaagaatgtcttgaaggattcattttcaaactttcctccacgaccactccttacaatgataa |
20969793 |
T |
|
| Q |
448 |
ttctcatgtctttttcattctgaactcattctcatcaaagaatgtcttgaagaaaaatttcttgaaggattcattttcaaacttttctccatgatcactc |
547 |
Q |
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| T |
20969794 |
ttctcatgtctttttcattctgaactcattctcatcaaagaatgtcttgaagaaaaatttcttgaaggattcattttcaaactttcctccatgatcactc |
20969893 |
T |
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| Q |
548 |
cttacaaagataattctcatgtcttttaaactt |
580 |
Q |
| |
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| T |
20969894 |
cttacaaagataattctcatgtcttttaaactt |
20969926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 615 - 731
Target Start/End: Complemental strand, 5523372 - 5523256
Alignment:
| Q |
615 |
gaagtctttctttttcttgatttaaattatcaatctcttttttcaaagataaacacttgttggttaagaatctttctgtgtttatgagattctcaaaatc |
714 |
Q |
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||||||||||| |||||| |||||||| |||| |||| |||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
5523372 |
gaagtctttctatttctttatttaaatcatcattctccttttgcaaagataaacacttgttggttaagaatcactcatcatttatgagattttcaaaatc |
5523273 |
T |
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| Q |
715 |
aatgtcaagtttttcat |
731 |
Q |
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| | ||||||| ||||| |
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| T |
5523272 |
attttcaagttgttcat |
5523256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 656
Target Start/End: Original strand, 33188421 - 33188481
Alignment:
| Q |
596 |
gaaatattattcaaggtttgaagtctttctttttcttgatttaaattatcaatctcttttt |
656 |
Q |
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| T |
33188421 |
gaaatatcatttaaggtttgaagtttttctttttcttgctttaagtcatcaatctcttttt |
33188481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 552
Target Start/End: Original strand, 14888201 - 14888244
Alignment:
| Q |
509 |
ttgaaggattcattttcaaacttttctccatgatcactccttac |
552 |
Q |
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| T |
14888201 |
ttgaaggatgcattttcaaattttcctccatgatcactccttac |
14888244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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