View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_22 (Length: 362)
Name: NF11781_low_22
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 35417479 - 35417823
Alignment:
| Q |
1 |
aaaaccaaagaagccatttgtaatatgtnnnnnnnnnnnntgttttatgatggtcttgttgaggttttgtgttatgtttgttcatgagtttcattctaac |
100 |
Q |
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| T |
35417479 |
aaaaccaaagaagccatttgtaatatgtaaaaaagaaaaatgttttatgatggtcttgttgaggttttgtgttatgtttgttcatgagtttcattctaac |
35417578 |
T |
|
| Q |
101 |
atagaatcctttgttcttgaggggagtctttagttccaacatttgaagagaagggtttgaatttgaatgagtagttgagattgagctttcggttattggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417579 |
atagaatcctttgttcttgaggggagtctttagttccaacatttgaagagaagggtttgaatttgaatgagtagttgagattgagctttcggttattggt |
35417678 |
T |
|
| Q |
201 |
gtaggaagaagtggaaatgaaggaaaaaacaagagaataagaggaaggtatgagtttgttggcaaatagttttagcaacaaaaataaacaaatatgggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417679 |
gtaggaagaagtggaaatgaaggaaaaaacaagagaataagaggaaggtatgagtttgttggcaaatagttttagcaacaaaaataaacaaatatgggat |
35417778 |
T |
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| Q |
301 |
ttgtaggaaggaggagtaagttataattttgttagagggctttgt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35417779 |
ttgtaggaaggaggagtaagttataattttgttagagggttttgt |
35417823 |
T |
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