View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_23 (Length: 320)
Name: NF11781_low_23
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_23 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 35417187 - 35417491
Alignment:
| Q |
16 |
acaggaacaaagaagaaatcagcttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtg |
115 |
Q |
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| T |
35417187 |
acaggaacaaagaagaaatcagcttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtg |
35417286 |
T |
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| Q |
116 |
ttttacacctcccatttacaagccaatcattgttgtattttgaaggtagctcataaacaaacaccttcaaatttttcaacatatctaatgagttatgaga |
215 |
Q |
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| T |
35417287 |
ttttacacctcccatttacaagccaatcattgttgtattttgaaggtagctcataaacaaacaccttcaaatttttcaacatatctaatgagttatgaga |
35417386 |
T |
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| Q |
216 |
aacaatgttggaattagaatttgagacaatggttgttatgtcttgtgggtcattggtgatgagatgagaggtgaagaaataaagagaaagagaaaaccaa |
315 |
Q |
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| T |
35417387 |
aacaacgttggaattagaatttgagacaatggttgttatgtcttgtgggtcattggtgatgagataagaggtgaagaaataaagagaaagagaaaaccaa |
35417486 |
T |
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| Q |
316 |
agaag |
320 |
Q |
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||||| |
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| T |
35417487 |
agaag |
35417491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 12172863 - 12172910
Alignment:
| Q |
22 |
acaaagaagaaatcagcttcataagggtcaaaagttctcacatcactt |
69 |
Q |
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| T |
12172863 |
acaaagaaaaaatcagcttcgtaagggtcaaaagttctaacatcactt |
12172910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 21056118 - 21056021
Alignment:
| Q |
22 |
acaaagaagaaatcagcttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgtttt |
119 |
Q |
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|||||||| |||||||||||||| |||||||||||||| ||||||||| | || || || | ||||||||||||||||||||||| ||||| ||||| |
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| T |
21056118 |
acaaagaaaaaatcagcttcatatgggtcaaaagttcttacatcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagtttt |
21056021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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