View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_25 (Length: 311)
Name: NF11781_low_25
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 2932194 - 2932496
Alignment:
| Q |
1 |
tagtccaaacagacgcaagccaaatcagcctnnnnnnngaatgagatgaatgaggtagactagcatagtgaccaaactgaagaaagtgagcgtgcaactc |
100 |
Q |
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| T |
2932194 |
tagtccaaacagacgcaagccaaatcagcctaaaaaaagaatgagatgaatgaggtagactagcatagtgaccaaactgaagaaagtgagcgtgcaactc |
2932293 |
T |
|
| Q |
101 |
aaacgatgttgtagtaatgtctagccacttccagatgaaagaccaaaggccgccgaacatgttgcatcccaaaaacaaatgcaccgccgtttccgaaaaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2932294 |
aaacgatgttgtagtaatgcctagccacttccagatgagagaccaaaggccgccgaacatgttgcatcccaaaaacaaatgcaccgccgtttccgaagaa |
2932393 |
T |
|
| Q |
201 |
ccacaacctctaacacaaatgttactgtcatcctgaagaaccctccgccgcatgagagggatgaagatcttcttctttccgattaatcttgataacccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2932394 |
ccacaacctctaacacaaatgttactgtcatcctgaagaaccctccgccgcacgagagggatgaaaatcttcttctttccgattaatcttgataacccaa |
2932493 |
T |
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| Q |
301 |
cgt |
303 |
Q |
| |
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||| |
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| T |
2932494 |
cgt |
2932496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 3903367 - 3903520
Alignment:
| Q |
39 |
gaatgagatgaatgaggtagactagcatagtgaccaaactgaagaaagtgagcgtgcaactcaaacgatgt----tgtagtaatgtctagccacttccag |
134 |
Q |
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|||||||||||| ||||||||| | | ||||||||||| |||||||||||| || ||||||||||||| || ||||||||| ||| ||||||||| |
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| T |
3903367 |
gaatgagatgaacgaggtagaccaacgtagtgaccaaattgaagaaagtgatcgcgcaactcaaacga-gtcaaccgtagtaatgcctaatcacttccag |
3903465 |
T |
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| Q |
135 |
atgaaagaccaaaggccgccgaacatgttgcatcccaaaaacaaatgcaccgccg |
189 |
Q |
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|||| |||||||||| | |||| | |||||| |||||||||||||| ||||||| |
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| T |
3903466 |
atgagagaccaaaggttgtcgaataggttgcaccccaaaaacaaatgtaccgccg |
3903520 |
T |
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