View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_29 (Length: 283)
Name: NF11781_low_29
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 36772621 - 36772887
Alignment:
| Q |
1 |
ttgatgtcctctctggattttatatatgtatatcaagcattaaacagatacaagtctaatccacataagttgtggaaaacatttggaacaaatttctcaa |
100 |
Q |
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| T |
36772621 |
ttgatgtcccctctggattttatatatgtatatcaagcattaaacagatacaagtctaatccacataagttgtggaaaacatttggaacaaatttctcaa |
36772720 |
T |
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| Q |
101 |
ataaattttgtgttcatcagaagctctttcaattgatccattctttgattttccaatttccatttcaatgcttttatggcaaatcttggaactacacaaa |
200 |
Q |
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| T |
36772721 |
ataaattttgtgttcatcagaagctctttcaattgatccattctttgattttccaatttccatttcaaagcttttatggcaaatcttggaactacacaaa |
36772820 |
T |
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| Q |
201 |
gaataccaacctcaaaaccttcatcccccaacaacagacacatatgaaccaaaatcaccacatgaaaa |
268 |
Q |
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| T |
36772821 |
gaataccaacttcaaaaccttcat-ccccaacaacagacacatatgaaccaaaatcaccacatgaaaa |
36772887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 36770497 - 36770643
Alignment:
| Q |
127 |
tttcaattgatccattctttgattttccaatttccatttcaatgcttttatggcaaatcttggaactacacaaagaa---taccaa---cctcaaaacct |
220 |
Q |
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| T |
36770497 |
tttcaattgatccattctttgatttttcagttttcacttcaaaagtgtcatggcaaatcttggaactacacaaagaatactaccaacctcctcaaaacct |
36770596 |
T |
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| Q |
221 |
tcatcccccaacaacagacacatatgaaccaaaatcaccacatgaaaa |
268 |
Q |
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| T |
36770597 |
tcat-ccccaacaactgacacacacgaaccaaaatcaccacatgaaaa |
36770643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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