View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_3 (Length: 698)
Name: NF11781_low_3
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 1 - 683
Target Start/End: Complemental strand, 34670493 - 34669813
Alignment:
| Q |
1 |
atggctttcataatggaattcgctgagaatctggttctgaaattgatggaagatcctaacgaaagggatcgtagattcagggaacatgtgtataagacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34670493 |
atggctttcataatggaattcgctgagaatctggttctgaaattgatggaagatcctaacgaaagggatcgtagattcagggaacatgtgtataagacga |
34670394 |
T |
|
| Q |
101 |
aggataggtgcgcgaagacgaaggagatgtggagttaccctatgcggccttatgggttctggacatttgaacgccataactctcagcttgcttgggatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34670393 |
aggataggtgcgcgaagacgaaggagatgtggagttaccctatgcgaccttatggtttctggacatttgaacgccataactctcagcttgcttgggatgc |
34670294 |
T |
|
| Q |
201 |
tcagattagtcaagttgctggtcgtagggatccttatgatgaaattctttcacattaccctgcctcatcttcgaaatgaggtttttgctcttcttatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34670293 |
tcagattagtcaagttgctggtcgtagggatccttatgatgaaattctttcacattaccctgcctcatcttcgaaatgaggtttttgctcttcttatttt |
34670194 |
T |
|
| Q |
301 |
tatttgatgatacttctagaattgtaagaaaatttaaatgattcaatgtaacaagatttgttggtgctacaatgtaggaggttttaggatcggttgggat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34670193 |
tatttgatgatacttctagaattgtaagaaaatttaaatgattcaatgtaacaagatttgttggtgctacaatgtaggaggttttaggatcggttgggat |
34670094 |
T |
|
| Q |
401 |
tgtggacttggttaagattagagtcgattgtgaaactttgcatatgtcttgttatgtctatccgtcatttactcaatgagaaatgnnnnnnnnnnnnnnn |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
34670093 |
tgtggacttggttaagattagagtcgattgtgaaactttgcatatgtcgtgttatgtctatccgtcatttactcaatgagaatt--ttatttttattttt |
34669996 |
T |
|
| Q |
501 |
atgggcaaatgttaataattagtagtaacttgttagagggagggggaaatgttagtagcaggggttgaaacttggacttcttgcatataattcctttggt |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
34669995 |
atgggcaaatgttaataattagtagtaacttgttagagggagggggaaatgttagtagcaggggttgaaccttggacttcttgcatacaattcctttggt |
34669896 |
T |
|
| Q |
601 |
gtcccaagccaaaccactgggctactccttcgggacctttatgagaaacttaatcattaatgtggcatgagctgaattcagtg |
683 |
Q |
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| T |
34669895 |
gtcccaagccaaaccactgggctactccttcgggacctttatgagaaacttaatcattaatgtggcatgagctgaattcagtg |
34669813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 16680361 - 16680188
Alignment:
| Q |
4 |
gctttcataatggaattcgctgagaatctggttctgaaattgatggaagatcctaacgaaagggatcgtagattcagggaacatgtgtataagacgaagg |
103 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | |
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| T |
16680361 |
gctttcataatggaatttgctgagaatctggttttgaaattgatggaagatccaaataaaagggatcgtagattcagggaacatgtgtataagacgaatg |
16680262 |
T |
|
| Q |
104 |
ataggtgcgcgaagacgaaggagatgtggagttaccctatgcggccttatgggttctggacatttgaacgccat |
177 |
Q |
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| T |
16680261 |
ataggtgcgcgaagatgaaggagatgtggagttaccctatgcaaccttaagggttctggacatttgaatgccat |
16680188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 595
Target Start/End: Complemental strand, 12787651 - 12787585
Alignment:
| Q |
530 |
ttgttagagggaggggg-aaatgttagtagcaggggttgaaacttggacttcttgcatataattcct |
595 |
Q |
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||||||| ||||||||| ||||||||||||||||| ||||| | |||||||| ||||||||| |||| |
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| T |
12787651 |
ttgttagggggaggggggaaatgttagtagcagggattgaaccctggacttcctgcatataactcct |
12787585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 630
Target Start/End: Original strand, 20364491 - 20364574
Alignment:
| Q |
547 |
aaatgttagtagcaggggttgaaacttggacttcttgcatataattcctttggtgtcccaagccaaaccactgggctactcctt |
630 |
Q |
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||||||||||||||||| ||||| | ||| || ||||||||| || ||||| ||||||| |||||||||| || |||||||| |
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| T |
20364491 |
aaatgttagtagcagggattgaattctagacctcctgcatataactcatttggagtcccaacccaaaccactaggttactcctt |
20364574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 571
Target Start/End: Complemental strand, 30654516 - 30654475
Alignment:
| Q |
530 |
ttgttagagggagggggaaatgttagtagcaggggttgaaac |
571 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
30654516 |
ttgttaggaggaggggtaaatgttagtagcaggggttgaaac |
30654475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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