View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_30 (Length: 277)
Name: NF11781_low_30
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 39758723 - 39758988
Alignment:
| Q |
1 |
cccttgatagctagatttttagggtgggttcaccaagtgcttggatacttctcaattggcatccgagttaattgttacttgtcagcggctcagaaagtgt |
100 |
Q |
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| T |
39758723 |
cccttgatagctagatttttagggtgggttcaccaagtgcttggatacttctcaattggcatccgagttaattgttacttgtcagcggctcagaaagtgt |
39758822 |
T |
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| Q |
101 |
tacacattatgcaggttggtattagttttgtgttttctgtttaaggtaatattactatcaaaccattgatcttgtaacactaaaaagctgaagaattcaa |
200 |
Q |
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| T |
39758823 |
tacacattatgcaggctggtattagttttgtgttttctgtttaaggtaatattactatcaaaccattgatcttgtaacactaaaaagctgaagaattcaa |
39758922 |
T |
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| Q |
201 |
aagtattctgttgttggctcttccactaacttctaccattttcatcaccatcactactttgttctt |
266 |
Q |
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| T |
39758923 |
aagtattctgttgttggctcttccactaactcctaccattttcatcaccatcactactttgttctt |
39758988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47484240 - 47484191
Alignment:
| Q |
1 |
cccttgatagctagatttttagggtgggttcaccaagtgcttggatactt |
50 |
Q |
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||||||||| |||| |||| |||| |||||| |||||||||||||||||| |
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| T |
47484240 |
cccttgataactagcttttaagggagggttccccaagtgcttggatactt |
47484191 |
T |
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