View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_33 (Length: 248)
Name: NF11781_low_33
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 33295220 - 33294976
Alignment:
| Q |
1 |
acaatattggtgtatagataagttttttatgataatattgaaaaagacaatttatctaaaaatttaattcatatacattagtttnnnnnnn-ttacaccg |
99 |
Q |
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| T |
33295220 |
acaataatggtgtatagataagttttttatgataatattgaaaaagacaatttatctaaaaatttaattcatatacattagtttaaaaaaaattacaccg |
33295121 |
T |
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| Q |
100 |
tcaataaatcgtaatcgttctatcattaaaaacgtttgacattaatcataactacttataaaattagacaaatggtatataactttttacactcacatta |
199 |
Q |
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| T |
33295120 |
tcaataaattgtaatcgttctatcattaaaaatgtttgacgttaatcataactacttataaaattagacaaatggtatataactttttacactcacatta |
33295021 |
T |
|
| Q |
200 |
tatcaaaattattctcttcatgaaatttttattcactttcatctc |
244 |
Q |
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| T |
33295020 |
tatcaaaattattctcttcatgaaatttttattcactttcatctc |
33294976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 15867682 - 15867614
Alignment:
| Q |
92 |
ttacaccgtcaataaatcgtaatcgttctatcattaaaaacgtttgacattaatcataactacttataa |
160 |
Q |
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| T |
15867682 |
ttacaacgtcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataactatttataa |
15867614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 5361606 - 5361569
Alignment:
| Q |
126 |
taaaaacgtttgacattaatcataactacttataaaat |
163 |
Q |
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| T |
5361606 |
taaaaacgtttgactataatcataactacttataaaat |
5361569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 39560389 - 39560348
Alignment:
| Q |
120 |
tatcattaaaaacgtttgacattaatcataactacttataaa |
161 |
Q |
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|||||||||||| ||||||| |||||||||||||||| |||| |
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|
| T |
39560389 |
tatcattaaaaatgtttgactttaatcataactacttctaaa |
39560348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 35169949 - 35170018
Alignment:
| Q |
92 |
ttacaccgtcaataaatcgtaatcgttctatcattaaaaacgtttgacattaatcataactacttataaa |
161 |
Q |
| |
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|||||| |||||| ||| ||||||||| || |||||| | ||||||| |||||||||||||||| |||| |
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| T |
35169949 |
ttacactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaa |
35170018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 5376313 - 5376353
Alignment:
| Q |
121 |
atcattaaaaacgtttgacattaatcataactacttataaa |
161 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
5376313 |
atcattaaaaacgtttgactgtaatcataactacttctaaa |
5376353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 31650308 - 31650348
Alignment:
| Q |
121 |
atcattaaaaacgtttgacattaatcataactacttataaa |
161 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||| |||| |
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|
| T |
31650308 |
atcattaaaaatgtttgactttaatcataactacttctaaa |
31650348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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