View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_34 (Length: 246)
Name: NF11781_low_34
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 17070552 - 17070337
Alignment:
| Q |
20 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
119 |
Q |
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| T |
17070552 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
17070453 |
T |
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| Q |
120 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070452 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
17070353 |
T |
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| Q |
220 |
gaattagctcgttctt |
235 |
Q |
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||||||||||||||| |
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| T |
17070352 |
caattagctcgttctt |
17070337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 17577721 - 17577936
Alignment:
| Q |
20 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577721 |
gtatcacatcctctggggtacataatcctctggggtgaccctctggacctatagtttgaattatacaactaatactctttctttattcaaactatcaaaa |
17577820 |
T |
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| Q |
120 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
219 |
Q |
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| T |
17577821 |
ttcaccacccgtatttctcttcttagcttcaaaaactgatctctcttcagagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
17577920 |
T |
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| Q |
220 |
gaattagctcgttctt |
235 |
Q |
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||||||||||||||| |
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| T |
17577921 |
caattagctcgttctt |
17577936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 29355717 - 29355572
Alignment:
| Q |
69 |
tatagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttcttagcttcaaaaactgatctctcttca |
168 |
Q |
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|||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||| | |||||||||||||| |||||||||||| ||||||||| |
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| T |
29355717 |
tatagtttgaattatacaaccaatactc---cttaattcaaactatcaaagttcaccgttcatatttctcttcttaacttcaaaaactggcctctcttca |
29355621 |
T |
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| Q |
169 |
gagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaa |
219 |
Q |
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||| |||||| |||||||| ||| ||||||||||||||||||||||||| |
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| T |
29355620 |
tagc--ttgtgaccaagtctgccaattggtcttgtgtaggacaatactcaa |
29355572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 40740733 - 40740898
Alignment:
| Q |
68 |
ctatagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttcttagcttcaaaaactgatctctcttc |
167 |
Q |
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||||||||| ||||||||||| |||||||| ||| | ||||| ||| |||||||||||| | |||||| |||||||||||||||||| || ||||| |
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| T |
40740733 |
ctatagtttaaattatacaaccaatactct--cttaaatcaaaatattaaaattcaccactcctatttcatttcttagcttcaaaaactagcctgtcttc |
40740830 |
T |
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| Q |
168 |
agagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaagaattagctcgttctt |
235 |
Q |
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| | |||||||||| |||| ||| || || | ||||||| ||||| |||||| | |||||| |||||| |
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| T |
40740831 |
ataacttttgtgaataagtatgttaattgtttttgtgtaagacaaaactcaacacttagcttgttctt |
40740898 |
T |
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