View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_39 (Length: 241)
Name: NF11781_low_39
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 17857384 - 17857606
Alignment:
| Q |
19 |
ggtcctgctcgctatttttctaacctgctctgcatttccaagcatgccaacttttgtttctcacccttcttgatgttagcgacttagctttgcttcgctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17857384 |
ggtcctgctcgctatttttctaacctgctctgcatttccaagcatgccaacttttgtttctcacccttctggatgttagcgacttagctttgcttcgctt |
17857483 |
T |
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| Q |
119 |
tctctcgtagtcaagtgaacaagatatgttaagccctgttgtgaataggatctgacccttttcgcactcttcttttgcttgattgatttggatcaaacct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17857484 |
tctctcgtagtcaagtgaacaagatatgttaagccctgttgtgaataggatctgacccttttcgcactcttcttttgcttgattgatttggatcaaacct |
17857583 |
T |
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| Q |
219 |
gttgttgacattagccgaactct |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
17857584 |
gttgttgacattagccgaactct |
17857606 |
T |
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