View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_5 (Length: 604)
Name: NF11781_low_5
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 5159418 - 5160004
Alignment:
| Q |
1 |
gaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttat-ttgcaaagcatggctatttgtgg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5159418 |
gaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttatcttgcaaagcatggctatttgtgg |
5159517 |
T |
|
| Q |
100 |
acccaacaagaagaaagcacatagccaatacctaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaaaccagaaaaaaca |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159518 |
acccaacaagaagaaagcacatagccaataactaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaaaccagaaaaaaca |
5159617 |
T |
|
| Q |
200 |
tcactcattctcagactacacaaaggtcacaaacagaggggnnnnnnnctacaaattctgaagaatagagagagcataaaaaagacgaggtatcttgttc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159618 |
tcactcattctcagactacacaaaggtcacaaacagaggggaaaaaaactacaaattctgaagaatagagagagcataaaaaagacgaggtatcttgttc |
5159717 |
T |
|
| Q |
300 |
ttgtgataagataatatgctcttacgtggcaacatctatgctcctgttccatcctccctacgacttaacttcaaatcacaaactcacccacgaaacctca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159718 |
ttgtgataagataatatgctcttacgtggcaacatctatgctcctgttccatcctccctacgacttaacttcaaatcacaaactcacccacgaaacctca |
5159817 |
T |
|
| Q |
400 |
ccatttcttgtcaagcaagcctagactacccactctcaatatccgacgaaaccctagaaaagcgaggtttcattctccgccgaaccgcagaggggttaaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159818 |
ccatttcttgtcaagcaagcctagactacccactctcaatatccgacgaaaccctagaaaagcgaggtttcattctccgccgaaccgcagaggggttaaa |
5159917 |
T |
|
| Q |
500 |
cctagaagcacttaacaaaatattcgtagcagtagggtttccgcggcgcgacccggagaaaatacgcgttgcactcgagcacactga |
586 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159918 |
cctagaagcacttaacaaaatatttgtagcagtagggtttccgcggcgcgacccggagaaaatacgcgttgcactcgagcacactga |
5160004 |
T |
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