View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_7 (Length: 590)
Name: NF11781_low_7
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 204 - 559
Target Start/End: Complemental strand, 35556193 - 35555839
Alignment:
| Q |
204 |
cacatataacttaaattagagatatcaaacgtacaaataaaagttcatatcttccttcaatctcatctttccctaagatattagattggattatattaca |
303 |
Q |
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| T |
35556193 |
cacatataacttaaattagagatatcaaacgtacaaataaaagttcatatcttcct-caatctcatctttccctaagatattagattggattatattaca |
35556095 |
T |
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| Q |
304 |
attcgcgttggtgtattctttagataacagttttttctatttaattaaatagaaatgattgttggcacgacaataacacactcgacaacaagcacgactt |
403 |
Q |
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| T |
35556094 |
attcgcgttggtgtattctttagataacagttttttctatttaattaaacagaaatgattgttggcacgacaataacacactcgacaacaagcacgactt |
35555995 |
T |
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| Q |
404 |
gtagttgatgaagaacctgacgacatgggaaacctcgtgtgtgaaaggaagttggtaaccttaagttgcaacaacataatctaactggaaatagatgatg |
503 |
Q |
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| T |
35555994 |
gtagttgacgaagaacctgacgacatgggaaacctcgtgtgtgaaaggaagttggtaaccttaagttgcaacaacataatctaactggaaatagatgatg |
35555895 |
T |
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| Q |
504 |
ttctataagaatagtatataggtttttacctaatatttgaaatgtttccattttag |
559 |
Q |
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| T |
35555894 |
ttctataagaatagtatataggtttttacctaatatttgaaatgtttccattttag |
35555839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 35556381 - 35556256
Alignment:
| Q |
16 |
atgaataataggcgtaatggttgtgtaggggttttttctttgtaattacaagtctccctctatagatatgcattttatcagtgaaccacaactcagagag |
115 |
Q |
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| T |
35556381 |
atgaataataggtgtaatggttgtgtaggggttttttctttgtaattacaagtctccctctatagatatgcattttatcagtgaaccacaactcagagag |
35556282 |
T |
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| Q |
116 |
ggtatgtgttccaaaaatcggaagat |
141 |
Q |
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| T |
35556281 |
ggtatgtgttccaaaaatcggaagat |
35556256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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