View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11781_low_8 (Length: 570)

Name: NF11781_low_8
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11781_low_8
NF11781_low_8
[»] chr2 (2 HSPs)
chr2 (1-570)||(7962102-7962672)
chr2 (340-415)||(12793899-12793974)
[»] chr3 (3 HSPs)
chr3 (340-416)||(33161716-33161792)
chr3 (343-416)||(41876079-41876152)
chr3 (495-570)||(29192235-29192309)
[»] chr5 (8 HSPs)
chr5 (340-414)||(6784681-6784755)
chr5 (342-414)||(6775579-6775651)
chr5 (342-414)||(17491346-17491418)
chr5 (495-570)||(22869805-22869880)
chr5 (344-416)||(34367075-34367147)
chr5 (342-414)||(18915713-18915785)
chr5 (343-414)||(25345980-25346051)
chr5 (16-69)||(6005713-6005764)
[»] chr1 (1 HSPs)
chr1 (342-415)||(29579116-29579189)
[»] chr4 (3 HSPs)
chr4 (342-414)||(32116302-32116374)
chr4 (343-414)||(41128265-41128336)
chr4 (343-414)||(55048404-55048475)
[»] chr8 (1 HSPs)
chr8 (343-414)||(33863577-33863648)


Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 7962672 - 7962102
Alignment:
Q  1 tgatttataataaataattatattttaatgcaaaataatcaaatgtatatttctttcaagtattttacattcatataaaatgtacagtaaaaagatttat 100  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  7962672 tgatttttaataaataatcatattttaattcaaaataatcaaatgcatatttctttcaagtattttacattcatataaaatgtacagtaaaagaatttat 7962573  T
Q  101 taacgtggtttaacattatcgtatgctaaatttnnnnnnnttca--tattattgtatcatatgcatttatattgcgcatgagcttcataaacaaatgtgt 198  Q
    |||||| ||||||||||||||||||||||||||       || |  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7962572 taacgtagtttaacattatcgtatgctaaatttaaaaaaatttaaatattattgtatcatatgcatttatattgcgcatgagcttcataaacaaacgtgt 7962473  T
Q  199 ttaatgcaaatttagatgagcggtaagaatgataaatcataatcaactacatgattaaatttgctccagctcgcttgaaattcaattcacacttcatttc 298  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962472 ttaatgcaaatttggatgagcggtaagaatgataaatcataatcaactacatgattaaatttgctccagctcgcttgaaattcaattcacacttcatttc 7962373  T
Q  299 aatcaatgtacgtatacataatacttagctttgtaatcagcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcg 398  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962372 aatcaatgtacgtatacataacacttagctttgtaatcatcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcg 7962273  T
Q  399 attcacgtcaggttcataacnnnnnnnnnctcacattttttcatcaaaacgcaccgttttagtttcttacaaccagaacgcagcgttttatccactctct 498  Q
    ||||||||||||||||| ||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7962272 attcacgtcaggttcat-accttttttttctcacattttttcatcaaaacgcaccgttttagtttcttacaaccagaacgaagcgttttatagactctct 7962174  T
Q  499 taactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttctt 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962173 taactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttctt 7962102  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 12793899 - 12793974
Alignment:
Q  340 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12793899 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 12793974  T

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Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 33161716 - 33161792
Alignment:
Q  340 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161716 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 33161792  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 343 - 416
Target Start/End: Complemental strand, 41876152 - 41876079
Alignment:
Q  343 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41876152 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcatgtcaggttcata 41876079  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 495 - 570
Target Start/End: Original strand, 29192235 - 29192309
Alignment:
Q  495 ctcttaactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttctt 570  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29192235 ctcttaac-cttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttctt 29192309  T

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Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 6784755 - 6784681
Alignment:
Q  340 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784755 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6784681  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 6775651 - 6775579
Alignment:
Q  342 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6775651 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6775579  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 17491346 - 17491418
Alignment:
Q  342 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17491346 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 17491418  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 495 - 570
Target Start/End: Original strand, 22869805 - 22869880
Alignment:
Q  495 ctcttaactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttctt 570  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22869805 ctcttaactcttatttttatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttctt 22869880  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 34367147 - 34367075
Alignment:
Q  344 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34367147 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacatcaggttcata 34367075  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 18915713 - 18915785
Alignment:
Q  342 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18915713 tggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 18915785  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 343 - 414
Target Start/End: Original strand, 25345980 - 25346051
Alignment:
Q  343 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  25345980 ggatccgtggcgcaatggtagcgcgtctgactccagatcaaaaggttgcgtgtttgattctcgtcgggttca 25346051  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 6005764 - 6005713
Alignment:
Q  16 aattatattttaatgcaaaataatcaaatgtatatttctttcaagtattttaca 69  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||    
T  6005764 aattatattataatg-aaaataatcaa-tgtatatttctttcaaatattttaca 6005713  T

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Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 29579189 - 29579116
Alignment:
Q  342 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29579189 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 29579116  T

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Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 32116302 - 32116374
Alignment:
Q  342 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32116302 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 32116374  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 41128336 - 41128265
Alignment:
Q  343 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41128336 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 41128265  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 55048475 - 55048404
Alignment:
Q  343 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55048475 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 55048404  T

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Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 343 - 414
Target Start/End: Original strand, 33863577 - 33863648
Alignment:
Q  343 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33863577 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 33863648  T

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