View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11781_low_9 (Length: 542)
Name: NF11781_low_9
Description: NF11781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11781_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Complemental strand, 43015511 - 43014997
Alignment:
| Q |
18 |
caaagcatttgtgaagcttgttaaaggactagggacaccaacaacagcagacatttcatctctatgaatctgagtaacaatttccttagaagaagaactt |
117 |
Q |
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| T |
43015511 |
caaagcatttgtgaagcttgttaaaggactagggacaccaacaacagcagacatttcatctctatgaatctgagtaacaatttccttagaagaagaactt |
43015412 |
T |
|
| Q |
118 |
ccacttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccggttgttgttgttgcactaattattctttgattattat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43015411 |
ccacttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccagttgttgttgttgcactaattattctttgattattat |
43015312 |
T |
|
| Q |
218 |
cagaccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015311 |
cagaccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatg |
43015212 |
T |
|
| Q |
318 |
catcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataaca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015211 |
catcacccaattcgtcttctcgggttttcgattctttccgaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataaca |
43015112 |
T |
|
| Q |
418 |
ggtctggtcttaccagttttgtgccatcttgtttctcctcctgtacttccttgtaagtcacactcttcggtttgaatctttctcctctttcgtgttcctg |
517 |
Q |
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| T |
43015111 |
ggtctggtcttaccagttttgtgccatcttgtttctcctcctgtacttccttgtaagtcacactcttcggtttgaatctttctcctctttcgtgttcctg |
43015012 |
T |
|
| Q |
518 |
ttgtatatgcctttg |
532 |
Q |
| |
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||||||||||||||| |
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| T |
43015011 |
ttgtatatgcctttg |
43014997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 452
Target Start/End: Original strand, 28948724 - 28948919
Alignment:
| Q |
257 |
tctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttcc |
356 |
Q |
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||||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || || | | |||| |
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| T |
28948724 |
tctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttcc |
28948823 |
T |
|
| Q |
357 |
aaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttc |
452 |
Q |
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| ||||||||||||| || || || |||||| ||||||| ||||| || ||||| ||||| || || || |||||||||||||||||||| |
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| T |
28948824 |
atagttggtgtagaggactagtatcttcttgaaacctttcataacaccatcaataataactggtctagttttccctgttttgtgccatcttgtttc |
28948919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 371
Target Start/End: Complemental strand, 4235893 - 4235754
Alignment:
| Q |
232 |
tgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcg |
331 |
Q |
| |
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||||| ||||||||||| || || ||||||||| |||| | ||||| ||| | |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
4235893 |
tgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattag |
4235794 |
T |
|
| Q |
332 |
tcttctcgggttttcgattctttccaa-agttggtgtagag |
371 |
Q |
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||||||| ||||||| | ||||| ||| ||||||||||||| |
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| T |
4235793 |
tcttctctggttttcca-tctttgcaatagttggtgtagag |
4235754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 38887137 - 38887028
Alignment:
| Q |
277 |
ccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaa |
376 |
Q |
| |
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||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| || ||||| || |||| | ||||| |||| ||||| || |||| |
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| T |
38887137 |
ccttctttctcctcttcattgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaa |
38887038 |
T |
|
| Q |
377 |
gaattttctt |
386 |
Q |
| |
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|||||||||| |
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| T |
38887037 |
gaattttctt |
38887028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 396
Target Start/End: Complemental strand, 30505981 - 30505860
Alignment:
| Q |
275 |
ctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaac |
374 |
Q |
| |
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||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||| || |||| | |||||| |||| ||||| || || |
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| T |
30505981 |
ctccttctttctcttcttcatcactcccaagatgatactgatgcatcacccaatttgttttctctggctttctttgttttccatagtttgtgtaaagtac |
30505882 |
T |
|
| Q |
375 |
aagaattttcttgcaacctttt |
396 |
Q |
| |
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||||||||| ||| |||||||| |
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| T |
30505881 |
aagaatttttttgtaacctttt |
30505860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 395
Target Start/End: Original strand, 34829853 - 34830007
Alignment:
| Q |
241 |
tgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgg |
340 |
Q |
| |
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||||| || ||||| | |||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | |
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| T |
34829853 |
tgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcag |
34829952 |
T |
|
| Q |
341 |
gttttcgattctttccaaagttggtgtagagaacaagaattttcttgcaaccttt |
395 |
Q |
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| || | | ||||| ||||||||||||| || || || |||||| ||||||| |
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| T |
34829953 |
gcttcttttgccttccatagttggtgtagaggactagtatcttcttgaaaccttt |
34830007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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