View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11782_high_4 (Length: 385)
Name: NF11782_high_4
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11782_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 30875555 - 30875926
Alignment:
| Q |
1 |
agactaacatcaatctctggaagttgaaagccaacttgagaatggattcgatgtgcaaaggaatcaagctttggcttcagtgcttttgcagaaggacccc |
100 |
Q |
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| T |
30875555 |
agactaacatcaatctctggaagttgaaagccaacttgagaatggattcgatgtgcaaaggaatcaagctttggcttcagtgcttttgcagaaggacccc |
30875654 |
T |
|
| Q |
101 |
cctcaactccaaattcgttatatctatata----agaacataagatacataagcaaaaaacttcactaaagcataaaaataggggatgaagagagaataa |
196 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30875655 |
cctcaactccaaattcgttatatctatatagcaaagaacataagatacataagcaaaaaacttcactaaagcataaaaatagaggatgaagagagaataa |
30875754 |
T |
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| Q |
197 |
ctgtcaggattattaaataaggagtgtttgaacaattataatatcaaatggaagaatcttttagcttatagcccttaatccggcttataaagtgcaatgc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30875755 |
ctgtcaggattattaaataaggagtgtttgaacaattataatatcaaatggaagaatcttttagcttatagcccttaatccggcttataaagtgcaatgc |
30875854 |
T |
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| Q |
297 |
taacaacatcaacttttgcagacacgtagaatggttcttaaatcaagtgcaatggaaagtgtcgttatcatg |
368 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30875855 |
taacaacatcaacttttgcagacacgtagaatggttcctaaatcaagtgcaatggaaagtgtcgttatcatg |
30875926 |
T |
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