View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11782_high_5 (Length: 311)
Name: NF11782_high_5
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11782_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 107 - 311
Target Start/End: Complemental strand, 42667614 - 42667410
Alignment:
| Q |
107 |
catcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatctgaaaagattgagaaaacaaaaaat |
206 |
Q |
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| T |
42667614 |
catcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatctgaaaagattgagaaaacaaaaaat |
42667515 |
T |
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| Q |
207 |
aacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaaggaaagaagaagcatagacataaaagcg |
306 |
Q |
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| T |
42667514 |
aacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaaggaaagaagaagcatagacataaaagcg |
42667415 |
T |
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| Q |
307 |
ttgaa |
311 |
Q |
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| T |
42667414 |
ttgaa |
42667410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 42667708 - 42667642
Alignment:
| Q |
13 |
gagatgaacagtggcgatttagcgatgatactcatgttaaccgttatcgtggattggacttaaactt |
79 |
Q |
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| T |
42667708 |
gagatgaacagtggcgatttagcgatgatactcatgttaaccgttatcgtggattggacttaaactt |
42667642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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