View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11782_high_8 (Length: 259)
Name: NF11782_high_8
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11782_high_8 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 7195402 - 7195144
Alignment:
| Q |
1 |
tatacaaaatgaagccatgacatgctgttaaaactacagaaaaaataatttaccactaaccaaccgctttagatgtcaccaagtccatatttgcaacaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7195402 |
tatacaaaatgaagccatgacatgctgttaaaactacagaaaaaataatttaccactaaccaatcgctttagatgtcaccaagtccatatttgcaacaaa |
7195303 |
T |
|
| Q |
101 |
ccttttataggaccctgtagtgcaattttaaacatttgaatattttcttcacaaaccaaaacaaagtatgaaagtaaatcaattaattttagctttacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7195302 |
ccttttataggaccctgtagtgcaattttaaacatttgaatattttcttcacaaaccaaaacaaagtatgaaagtaaatcaattaattttagctttacct |
7195203 |
T |
|
| Q |
201 |
tgtatggtcttattactgagtatagcaactatacatttaaggaagaaaacctggttttt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7195202 |
tgtatggtcttattactgagtatagcaactatacatttaaggaagaaaacctggttttt |
7195144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 27561587 - 27561405
Alignment:
| Q |
32 |
aactacagaaaaaataatttaccactaaccaaccgctttagatgtcaccaagtccatatttgcaacaaaccttttataggaccctgtagtgcaattttaa |
131 |
Q |
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||||||| ||| | |||||||||| ||| ||| | | ||||||||| |||||||||||||||| || || |||||||||||| |||| ||||| || || |
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| T |
27561587 |
aactacaaaaagattaatttaccagtaatcaatccatgtagatgtcatcaagtccatatttgcatcagactttttataggaccttgtactgcaacttcaa |
27561488 |
T |
|
| Q |
132 |
acatttgaatattt-tcttcacaaaccaaaacaaagtatgaaagtaaatcaattaattttagctttaccttgtatggtcttat |
213 |
Q |
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| T |
27561487 |
tcatttgaatctttatcctcataaaccaaaacaaagtatgaaagtaaatcaatcaattttagctttaccttgtatggacttat |
27561405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 22144531 - 22144669
Alignment:
| Q |
70 |
tagatgtcaccaagtccatatttgcaacaaaccttttataggaccctgtagtgcaattttaaacatttgaatattt-tcttcacaaaccaaaacaaagta |
168 |
Q |
| |
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||||||||| |||||||| ||| ||| |||||||||||||||||| |||| ||||| || || ||||||||| ||| || |||||||||||||||||||| |
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| T |
22144531 |
tagatgtcatcaagtccagattagcagcaaaccttttataggaccttgtactgcaacttcaatcatttgaatctttatcctcacaaaccaaaacaaagta |
22144630 |
T |
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| Q |
169 |
tgaaagtaaatcaattaattttagctttaccttgtatgg |
207 |
Q |
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||||||||||||||| ||||||||||||||||| ||||| |
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| T |
22144631 |
tgaaagtaaatcaatcaattttagctttaccttttatgg |
22144669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 37458025 - 37457851
Alignment:
| Q |
32 |
aactacagaaaaaataatttaccactaaccaaccgctttagatgtcaccaagtccatatttgcaacaaaccttttataggaccctgtagtgcaattttaa |
131 |
Q |
| |
|
||||||| ||| | |||||||||| ||| ||| | | ||||||||| |||||||||||||||| || || |||||||||||| |||| ||||| || | |
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| T |
37458025 |
aactacaaaaagattaatttaccaataatcaatccatgtagatgtcatcaagtccatatttgcagcagactttttataggaccttgtactgcaacttcat |
37457926 |
T |
|
| Q |
132 |
acatttgaatattt-tcttcacaaaccaaaacaaagtatgaaagtaaatcaattaattttagctttaccttgtat |
205 |
Q |
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||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37457925 |
tcatttgaatctttatcctcacaaaccaaaacaaagtatgaaagtaaatcaatcgattttagctttaccttgtat |
37457851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 38510100 - 38510244
Alignment:
| Q |
70 |
tagatgtcaccaagtccatatttgcaacaaaccttttataggaccctgtagtgcaattttaaacatttgaatattt-tcttcacaaaccaaaacaaagta |
168 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||| || || ||||||||| ||| || |||||||||||||||||||| |
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| T |
38510100 |
tagatgtcatcaagtccatatttgcagcaaaccttttataggaccttgtactgcaacttcaatcatttgaatctttatcctcacaaaccaaaacaaagta |
38510199 |
T |
|
| Q |
169 |
tgaaagtaaatcaattaattttagctttaccttgtatggtcttat |
213 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
38510200 |
tgaaagtaaatcaatcaattttagctttaccttttatggacttat |
38510244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 53556128 - 53556234
Alignment:
| Q |
70 |
tagatgtcaccaagtccatatttgcaacaaaccttttataggaccctgtagtgcaattttaaacatttgaat-attttcttcacaaaccaaaacaaagta |
168 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| | || || || |||||| ||||||||||||||||||||| || | |
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| T |
53556128 |
tagatgtcatcaagtccatatttgcagcaaaccttttataggaccttgtactgc-acttcaatcacttgaatgtttttcttcacaaaccaaaacagagaa |
53556226 |
T |
|
| Q |
169 |
tgaaagta |
176 |
Q |
| |
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|||||||| |
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|
| T |
53556227 |
tgaaagta |
53556234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 30998800 - 30998860
Alignment:
| Q |
97 |
caaaccttttataggaccctgtagtgcaattttaaacatttgaatattt-tcttcacaaac |
156 |
Q |
| |
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|||||||||||||| ||| |||||||||| || || ||||||||| ||| ||||||||||| |
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| T |
30998800 |
caaaccttttatagaaccttgtagtgcaacttcaatcatttgaatctttatcttcacaaac |
30998860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 5742314 - 5742496
Alignment:
| Q |
32 |
aactacagaaaaaataatttaccactaaccaaccgctttagatgtcaccaagtccatatttgcaacaaaccttttataggaccctgtagtgcaattttaa |
131 |
Q |
| |
|
||||||| ||| | |||||||||| ||| ||| | | ||||||||| |||||||||||||||| || || |||||||||||| |||| ||||| || || |
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| T |
5742314 |
aactacaaaaagattaatttaccagtaatcaatccatgtagatgtcatcaagtccatatttgcatcagactttttataggaccttgtactgcaacttcaa |
5742413 |
T |
|
| Q |
132 |
acatttgaatattt-tcttcacaaaccaaaacaaagtatgaaagtaaatcaattaattttagctttaccttgtatggtcttat |
213 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
5742414 |
tcatttgaatctttatcctcacaaaccaaaacaaagtatgaaagtaaatcaatcaattttagctttaccttgtatggacttat |
5742496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 224
Target Start/End: Original strand, 1661796 - 1661950
Alignment:
| Q |
70 |
tagatgtcaccaagtccatatttgcaacaaaccttttataggaccctgtagtgcaattttaaacatttgaatattt-tcttcacaaaccaaaacaaagta |
168 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||||||| ||| |||| |||| || || ||||||||| ||| |||||| |||||||||||||| | |
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| T |
1661796 |
tagatgtcatcaagtccatatttgcagcaactcttttatagaaccttgtactgcacttc-aatcatttgaatgtttatcttcataaaccaaaacaaagaa |
1661894 |
T |
|
| Q |
169 |
tgaaagtaaatcaattaattttagctttaccttgtatggtcttattactgagtata |
224 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |||| || |||||||| |
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|
| T |
1661895 |
tgaaagtaaatcaatcaattttagttttaccttgtatgaacttactattgagtata |
1661950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 38319627 - 38319531
Alignment:
| Q |
152 |
caaaccaaaacaaagtatgaaagtaaatcaattaattttagctttaccttgtatggtcttattactgagtatagcaactatacatttaaggaagaaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||| || ||||| ||||||| |
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|
| T |
38319627 |
caaaccaaaacaaagtatgaaagtaaatcaatcaattttaactttaccttgtatggtcttattaccgaatatagcaactacacgtttaaagaagaaa |
38319531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 6106 - 6046
Alignment:
| Q |
97 |
caaaccttttataggaccctgtagtgcaattttaaacatttgaatattt-tcttcacaaac |
156 |
Q |
| |
|
|||||||||||||| ||| |||||||||| || || ||||||||| ||| ||||||||||| |
|
|
| T |
6106 |
caaaccttttatagaaccttgtagtgcaacttcaatcatttgaatctttatcttcacaaac |
6046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 12605856 - 12605916
Alignment:
| Q |
97 |
caaaccttttataggaccctgtagtgcaattttaaacatttgaatattt-tcttcacaaac |
156 |
Q |
| |
|
|||||||||||||| ||| |||||||||| || || ||||||||| ||| ||||||||||| |
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|
| T |
12605856 |
caaaccttttatagaaccttgtagtgcaacttcaatcatttgaatctttatcttcacaaac |
12605916 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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