View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11782_low_1 (Length: 707)
Name: NF11782_low_1
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11782_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 72 - 381
Target Start/End: Complemental strand, 45386762 - 45386453
Alignment:
| Q |
72 |
ctgctgcaactccaccgcctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttcc |
171 |
Q |
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| T |
45386762 |
ctgctgcaactccaccgcctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttcc |
45386663 |
T |
|
| Q |
172 |
aggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaag |
271 |
Q |
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| T |
45386662 |
aggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttcagaagaag |
45386563 |
T |
|
| Q |
272 |
agtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaa |
371 |
Q |
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| T |
45386562 |
agtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaa |
45386463 |
T |
|
| Q |
372 |
aagaggtaaa |
381 |
Q |
| |
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|||||||||| |
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| T |
45386462 |
aagaggtaaa |
45386453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 89 - 381
Target Start/End: Complemental strand, 45391114 - 45390822
Alignment:
| Q |
89 |
cctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
188 |
Q |
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| T |
45391114 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
45391015 |
T |
|
| Q |
189 |
taactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttga |
288 |
Q |
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| T |
45391014 |
taactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcatagaaaggttga |
45390915 |
T |
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| Q |
289 |
gcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||| | |||||||| |
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| T |
45390914 |
gcttctttctccgatcccaattgctcctgaggaggaaaaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
45390822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 460 - 691
Target Start/End: Complemental strand, 45386375 - 45386147
Alignment:
| Q |
460 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnn-ggatactgaaaatgaagggtac |
558 |
Q |
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| T |
45386375 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagataaaaaaaaggatactgaaaatgaagggtac |
45386276 |
T |
|
| Q |
559 |
tgtacaatatttaagtgtttttatttacaaaattatatggaattgtattttcactattaatttgttggatgttttaaaaatgagaccgaaccaattaaat |
658 |
Q |
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| T |
45386275 |
tgtacaatatttaagtctttttatttacaaaattatatagaattgtattttcact----atttgttggatgttttaaaaatcagaccgaaccaattaaat |
45386180 |
T |
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| Q |
659 |
cattacgcgcataatattcactccacttatatt |
691 |
Q |
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||||||||| |||||||||||||| |||||||| |
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| T |
45386179 |
cattacgcgtataatattcactccgcttatatt |
45386147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 526
Target Start/End: Complemental strand, 45390734 - 45390667
Alignment:
| Q |
462 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacagga |
526 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| |
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| T |
45390734 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagagga |
45390667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 89 - 381
Target Start/End: Complemental strand, 734722 - 734430
Alignment:
| Q |
89 |
cctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
188 |
Q |
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| T |
734722 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
734623 |
T |
|
| Q |
189 |
taactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttga |
288 |
Q |
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|| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
734622 |
tagctgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcataggaaggttga |
734523 |
T |
|
| Q |
289 |
gcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
381 |
Q |
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| T |
734522 |
gcttctttctccgatcccaattgctcctgaggaggaaaaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
734430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 526
Target Start/End: Complemental strand, 734341 - 734274
Alignment:
| Q |
462 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacagga |
526 |
Q |
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| T |
734341 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagagga |
734274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 164 - 308
Target Start/End: Complemental strand, 40578088 - 40577944
Alignment:
| Q |
164 |
gattttccaggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggtta |
263 |
Q |
| |
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|||||| |||| |||||||| ||| | ||||||||||||||||| | ||| |||| |||||||| ||||| || |||||||||||| | || || ||| |
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| T |
40578088 |
gatttttcaggggttgaagatgtggttactgattgcaaatctcacaaggttattgttaaaggagaaaaagcggatccattgaaggttcttgaaagagttc |
40577989 |
T |
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| Q |
264 |
agaagaagagtcacaggaaggttgagcttctttctccgatcccaa |
308 |
Q |
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| T |
40577988 |
agaggaagagtcatagacaagttgagcttctttctccgatcccaa |
40577944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 40578224 - 40578165
Alignment:
| Q |
116 |
ttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggt |
175 |
Q |
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||||||||||||||||| |||||||| ||||||||||| ||| | |||| |||||||||| |
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| T |
40578224 |
ttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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