View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11782_low_10 (Length: 252)
Name: NF11782_low_10
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11782_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7195122 - 7194888
Alignment:
| Q |
1 |
ccagctgttgcttctggcatattttgtctctttgtgtgttgtacagtggtgatttaatgagtttgtttgtttgtttgtgaaaaaacgcctgaaatatggc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7195122 |
ccagctgttgcttctggcatgttttgtctctttgtgtgttgtacagtggtgatttaatgagtttgtttgtttgtttctgaaaaaacgcctgaaatatggc |
7195023 |
T |
|
| Q |
101 |
atatttggtttcaaatttcatgtgtaaaagtgaatgaaagtgattgaaaaacttgtgaaaatgatgtttcttgatgaaggaatggtaaaagtggttaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7195022 |
atatttggtttcaaatttcatgtgtaaaagtgaatgaaagtgattgaaaaacttgtgaaaatgatgtttcttgatgaaggaat-gtaaaagtggttaaaa |
7194924 |
T |
|
| Q |
201 |
ttttaactttttaaaatgatgatttggcaatgatgg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7194923 |
ttttaactttttaaaatgatgatttggcaatgatgg |
7194888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 38319480 - 38319350
Alignment:
| Q |
10 |
gcttctggcatattttgtctctttgtgtgttgtacagtggtgatttaatgagtttgtttgtttgtttgtg-aaaaaacgcctgaaatatggcatatttgg |
108 |
Q |
| |
|
||||||||| | |||||||||||||||||| || ||||||||| |||||||| |||||||||||||| || |||||| ||||||||||||||||| |||| |
|
|
| T |
38319480 |
gcttctggcgtgttttgtctctttgtgtgtggttcagtggtgacttaatgagattgtttgtttgtttctgaaaaaaaggcctgaaatatggcatacttgg |
38319381 |
T |
|
| Q |
109 |
tttcaaatttcatgtgtaaaagtgaatgaaa |
139 |
Q |
| |
|
|||||| |||| |||| |||||||| ||||| |
|
|
| T |
38319380 |
tttcaattttcttgtgcaaaagtgattgaaa |
38319350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 9667135 - 9667214
Alignment:
| Q |
156 |
tgaaaatgatgtttcttgatgaaggaatggtaaaagtggttaaaattttaactttttaaaatgatgatttggcaatgatgg |
236 |
Q |
| |
|
|||||||||||||||||||| | | |||| |||||||||||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
9667135 |
tgaaaatgatgtttcttgatcatg-aatgctaaaagtggttaaaatttgaactttcgaaaatgatgatttggcaaggatgg |
9667214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University