View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11782_low_12 (Length: 206)

Name: NF11782_low_12
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11782_low_12
NF11782_low_12
[»] chr2 (3 HSPs)
chr2 (1-183)||(42667151-42667330)
chr2 (1-89)||(42667311-42667399)
chr2 (27-89)||(42667380-42667439)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 42667330 - 42667151
Alignment:
Q  1 acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42667330 acattataaattctgaacctccaatgaagaagcagcatagacataa---aagcgttgaaaattttcagagcattctgaattctgaacctgctactactgt 42667234  T
Q  101 gccttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcac 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42667233 gccttcttattcttctccttttcctgatttgttctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcac 42667151  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42667399 - 42667311
Alignment:
Q  1 acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagagcattctgaattctgaacct 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  42667399 acattataaattctgaacctccaatgaagaagaagcatagacataataaaagcgttgaaaattttcagaacattataaattctgaacct 42667311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 42667439 - 42667380
Alignment:
Q  27 aagaagaagcatagacataataaaagcgttgaaaattttcagagcattctgaattctgaacct 89  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||| | ||||||||||||    
T  42667439 aagaagaagcatagacataa---aagcgttgaaaattttcagaacattataaattctgaacct 42667380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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