View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11782_low_3 (Length: 388)
Name: NF11782_low_3
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11782_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 38320858 - 38320975
Alignment:
| Q |
155 |
aatgcagaattaatactgcatccaactcaaagatgtgactaaatacctcacctaaggagggtggttaaagaagcccacgacgaaatgcaaaaccattagg |
254 |
Q |
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| T |
38320858 |
aatgcagaattaatactgcatccaactcaaagatgtgactaaatacctcacctaaggagggtagttaaagaagcccacgacgaaaggcaaaaccattagg |
38320957 |
T |
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| Q |
255 |
cataacgatagtcttgaa |
272 |
Q |
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| T |
38320958 |
cataacgatagtcttgaa |
38320975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 38320499 - 38320574
Alignment:
| Q |
45 |
tactaacaatcatatgaagctcaaacaaggactatgataagggtctaagtcacaaaaaggttgaactacaagacaa |
120 |
Q |
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| T |
38320499 |
tactaacaatcatatgaagctcaaacaaggactatgataagggtctaagtcacaaaaaggttgaactacaagacaa |
38320574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 38321468 - 38321546
Alignment:
| Q |
266 |
tcttgaagcgatcattagtgttcgaggtatattaccttagat-aaaaaataagatttgtttaaggagtatataatataacatg |
347 |
Q |
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| T |
38321468 |
tcttggagcgatcattaatgttcgaggtatattaccttagataaaaaaataagatttgtttaa----tatataatataacatg |
38321546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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