View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11782_low_8 (Length: 290)

Name: NF11782_low_8
Description: NF11782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11782_low_8
NF11782_low_8
[»] chr3 (31 HSPs)
chr3 (93-216)||(28610756-28610879)
chr3 (96-167)||(6505601-6505672)
chr3 (96-167)||(36817149-36817220)
chr3 (96-186)||(23442759-23442849)
chr3 (99-168)||(46992887-46992956)
chr3 (96-163)||(14398913-14398980)
chr3 (97-155)||(29929764-29929822)
chr3 (97-155)||(29978918-29978976)
chr3 (100-167)||(7837971-7838038)
chr3 (1-50)||(7842546-7842595)
chr3 (102-167)||(7842647-7842711)
chr3 (1-50)||(28610686-28610735)
chr3 (96-167)||(9429474-9429545)
chr3 (96-167)||(16444973-16445044)
chr3 (104-167)||(48250502-48250566)
chr3 (1-50)||(6505488-6505537)
chr3 (1-50)||(7838088-7838137)
chr3 (1-50)||(14399037-14399086)
chr3 (1-50)||(23442659-23442708)
chr3 (1-50)||(29929871-29929920)
chr3 (1-50)||(29979025-29979074)
chr3 (1-50)||(46992777-46992826)
chr3 (1-50)||(48250397-48250446)
chr3 (1-49)||(3949226-3949274)
chr3 (1-49)||(6741370-6741418)
chr3 (1-49)||(8160514-8160562)
chr3 (1-49)||(30947173-30947221)
chr3 (96-167)||(8160622-8160693)
chr3 (1-50)||(9429363-9429412)
chr3 (99-167)||(13747363-13747431)
chr3 (1-50)||(36817046-36817095)
[»] chr1 (45 HSPs)
chr1 (96-216)||(46973504-46973625)
chr1 (99-215)||(36076215-36076331)
chr1 (96-167)||(37015268-37015339)
chr1 (97-167)||(50117402-50117472)
chr1 (96-168)||(22345634-22345707)
chr1 (96-167)||(41454184-41454256)
chr1 (96-155)||(13174174-13174233)
chr1 (96-167)||(22398170-22398241)
chr1 (96-167)||(44465933-44466005)
chr1 (99-158)||(7980821-7980880)
chr1 (1-50)||(19498609-19498658)
chr1 (1-50)||(22345750-22345799)
chr1 (1-50)||(37015388-37015437)
chr1 (1-50)||(50117293-50117342)
chr1 (96-167)||(5078281-5078352)
chr1 (96-167)||(13629769-13629840)
chr1 (2-50)||(26466806-26466854)
chr1 (1-50)||(7980722-7980771)
chr1 (96-166)||(23914206-23914278)
chr1 (1-50)||(23914331-23914380)
chr1 (99-167)||(44620746-44620814)
chr1 (1-49)||(3947992-3948040)
chr1 (1-49)||(3983594-3983642)
chr1 (1-49)||(20349939-20349987)
chr1 (96-167)||(29356327-29356398)
chr1 (130-161)||(4516338-4516369)
chr1 (146-216)||(22345561-22345630)
chr1 (215-252)||(4516259-4516296)
chr1 (1-50)||(6561698-6561747)
chr1 (103-163)||(6561810-6561871)
chr1 (1-50)||(13174285-13174334)
chr1 (13-50)||(21943898-21943935)
chr1 (1-50)||(29356218-29356267)
chr1 (13-50)||(36076114-36076151)
chr1 (1-50)||(41454316-41454365)
chr1 (1-50)||(44466064-44466113)
chr1 (13-50)||(46973664-46973701)
chr1 (96-167)||(3948089-3948160)
chr1 (96-167)||(3983462-3983533)
chr1 (188-216)||(13174139-13174167)
chr1 (2-50)||(16247278-16247326)
chr1 (96-167)||(20349806-20349877)
chr1 (2-50)||(27569368-27569416)
chr1 (13-49)||(38775656-38775692)
chr1 (96-167)||(38775753-38775824)
[»] chr5 (30 HSPs)
chr5 (100-168)||(33993654-33993722)
chr5 (96-184)||(4203861-4203950)
chr5 (96-167)||(31098560-31098631)
chr5 (96-216)||(7800641-7800758)
chr5 (96-167)||(27867472-27867544)
chr5 (96-167)||(34123547-34123618)
chr5 (96-167)||(34078142-34078214)
chr5 (96-162)||(1036178-1036245)
chr5 (97-167)||(7021511-7021582)
chr5 (96-167)||(11033089-11033160)
chr5 (96-167)||(25896731-25896802)
chr5 (96-167)||(38859828-38859899)
chr5 (1-50)||(34123458-34123507)
chr5 (1-50)||(1036081-1036130)
chr5 (1-50)||(30354034-30354083)
chr5 (1-50)||(33993750-33993799)
chr5 (96-167)||(37820508-37820579)
chr5 (8-50)||(4203770-4203812)
chr5 (1-50)||(7021408-7021457)
chr5 (1-38)||(7800539-7800576)
chr5 (95-136)||(18537950-18537991)
chr5 (13-50)||(24051117-24051154)
chr5 (1-50)||(25896630-25896679)
chr5 (1-50)||(28885938-28885987)
chr5 (1-50)||(31098465-31098514)
chr5 (1-50)||(34078261-34078310)
chr5 (2-50)||(20285488-20285536)
chr5 (2-50)||(21999545-21999593)
chr5 (96-167)||(28886046-28886117)
chr5 (1-49)||(37820409-37820457)
[»] chr2 (37 HSPs)
chr2 (98-206)||(43949898-43950006)
chr2 (97-206)||(41008579-41008689)
chr2 (87-164)||(9651548-9651625)
chr2 (96-174)||(34921396-34921474)
chr2 (87-167)||(1100712-1100792)
chr2 (96-167)||(24750017-24750088)
chr2 (97-158)||(45475747-45475808)
chr2 (96-167)||(27276002-27276073)
chr2 (96-166)||(39794340-39794410)
chr2 (96-155)||(12908103-12908162)
chr2 (1-50)||(9651674-9651723)
chr2 (96-167)||(7263394-7263465)
chr2 (97-206)||(435653-435764)
chr2 (96-174)||(19186847-19186926)
chr2 (1-50)||(435815-435864)
chr2 (1-50)||(1100614-1100663)
chr2 (96-161)||(1149831-1149896)
chr2 (1-50)||(24605621-24605670)
chr2 (1-50)||(27275892-27275941)
chr2 (1-50)||(34921299-34921348)
chr2 (1-50)||(41008490-41008539)
chr2 (146-215)||(41182921-41182989)
chr2 (1-50)||(45475866-45475915)
chr2 (1-49)||(212971-213019)
chr2 (1-49)||(5335367-5335415)
chr2 (1-49)||(10623984-10624032)
chr2 (96-128)||(24607234-24607266)
chr2 (1-49)||(41560495-41560543)
chr2 (1-50)||(3803095-3803144)
chr2 (103-167)||(3803200-3803265)
chr2 (1-50)||(7263514-7263563)
chr2 (96-167)||(213079-213150)
chr2 (96-167)||(5335236-5335307)
chr2 (96-167)||(10624092-10624163)
chr2 (96-167)||(38946112-38946183)
chr2 (1-45)||(38946250-38946294)
chr2 (96-167)||(41560362-41560433)
[»] chr8 (27 HSPs)
chr8 (96-206)||(43370091-43370201)
chr8 (96-167)||(2146598-2146670)
chr8 (96-165)||(35966376-35966445)
chr8 (96-167)||(20547145-20547216)
chr8 (1-50)||(39752556-39752605)
chr8 (96-158)||(7168286-7168349)
chr8 (96-147)||(43689780-43689831)
chr8 (1-50)||(2146514-2146563)
chr8 (1-50)||(4866940-4866989)
chr8 (1-50)||(7168389-7168438)
chr8 (1-50)||(43689679-43689728)
chr8 (96-167)||(1115119-1115190)
chr8 (96-160)||(45454749-45454813)
chr8 (96-167)||(39752650-39752721)
chr8 (1-50)||(35966278-35966327)
chr8 (1-50)||(43370247-43370296)
chr8 (1-49)||(7340562-7340610)
chr8 (1-49)||(30305140-30305188)
chr8 (1-49)||(32432395-32432443)
chr8 (1-50)||(1115254-1115303)
chr8 (96-167)||(8423460-8423531)
chr8 (143-215)||(18206087-18206158)
chr8 (188-216)||(22577967-22577995)
chr8 (2-50)||(22657577-22657625)
chr8 (1-49)||(32378438-32378486)
chr8 (96-167)||(32378548-32378619)
chr8 (96-167)||(32432503-32432574)
[»] chr6 (18 HSPs)
chr6 (96-174)||(18606380-18606458)
chr6 (96-167)||(28250254-28250325)
chr6 (96-215)||(7362968-7363086)
chr6 (96-167)||(13388336-13388408)
chr6 (96-174)||(31146744-31146822)
chr6 (1-50)||(24219722-24219771)
chr6 (100-159)||(2052258-2052318)
chr6 (103-167)||(7361538-7361602)
chr6 (96-167)||(18347391-18347462)
chr6 (1-50)||(7362875-7362924)
chr6 (1-50)||(18606499-18606548)
chr6 (1-50)||(26702269-26702318)
chr6 (13-50)||(31146864-31146901)
chr6 (1-49)||(1612280-1612328)
chr6 (218-289)||(7363103-7363175)
chr6 (1-50)||(28250378-28250427)
chr6 (96-167)||(1612389-1612460)
chr6 (96-128)||(26702207-26702239)
[»] scaffold0038 (2 HSPs)
scaffold0038 (96-167)||(50416-50487)
scaffold0038 (1-50)||(50540-50589)
[»] chr4 (28 HSPs)
chr4 (105-168)||(38464403-38464466)
chr4 (96-174)||(51644124-51644202)
chr4 (104-168)||(11494920-11494984)
chr4 (104-168)||(11494998-11495062)
chr4 (96-167)||(44049474-44049545)
chr4 (96-158)||(4768999-4769061)
chr4 (96-167)||(13173608-13173679)
chr4 (96-174)||(18580955-18581034)
chr4 (1-50)||(4769119-4769168)
chr4 (1-50)||(18580857-18580906)
chr4 (1-50)||(38464312-38464361)
chr4 (1-50)||(44049601-44049650)
chr4 (1-50)||(51644016-51644065)
chr4 (100-167)||(4979556-4979623)
chr4 (1-50)||(4976238-4976287)
chr4 (1-50)||(4979466-4979515)
chr4 (103-167)||(19073286-19073351)
chr4 (1-50)||(21471294-21471343)
chr4 (1-49)||(49565994-49566042)
chr4 (1-50)||(3404293-3404342)
chr4 (103-167)||(9890373-9890438)
chr4 (1-50)||(9890504-9890553)
chr4 (1-50)||(11495114-11495163)
chr4 (1-50)||(17140070-17140119)
chr4 (1-50)||(19073189-19073238)
chr4 (1-50)||(41023854-41023903)
chr4 (96-167)||(3404175-3404246)
chr4 (96-167)||(49566102-49566173)
[»] scaffold0360 (1 HSPs)
scaffold0360 (96-160)||(6976-7040)
[»] scaffold0388 (1 HSPs)
scaffold0388 (96-174)||(11368-11447)
[»] scaffold0340 (2 HSPs)
scaffold0340 (97-167)||(808-878)
scaffold0340 (1-50)||(701-750)
[»] chr7 (19 HSPs)
chr7 (106-168)||(47061268-47061330)
chr7 (96-167)||(42499758-42499829)
chr7 (1-50)||(19046799-19046848)
chr7 (95-151)||(19046893-19046950)
chr7 (1-50)||(36186170-36186219)
chr7 (1-50)||(47061384-47061433)
chr7 (1-50)||(30787020-30787069)
chr7 (96-167)||(18105749-18105820)
chr7 (1-49)||(43623665-43623713)
chr7 (96-215)||(45763682-45763800)
chr7 (1-49)||(45763861-45763909)
chr7 (103-146)||(36186063-36186106)
chr7 (103-167)||(15059980-15060045)
chr7 (1-50)||(15060096-15060145)
chr7 (1-50)||(18105869-18105918)
chr7 (1-50)||(42499890-42499939)
chr7 (1-49)||(618280-618328)
chr7 (96-167)||(30786890-30786961)
chr7 (96-167)||(43623773-43623844)
[»] scaffold0219 (2 HSPs)
scaffold0219 (95-167)||(16052-16124)
scaffold0219 (1-50)||(16179-16228)
[»] scaffold0116 (1 HSPs)
scaffold0116 (96-167)||(11639-11710)
[»] scaffold0057 (2 HSPs)
scaffold0057 (96-167)||(22870-22941)
scaffold0057 (1-50)||(22764-22813)
[»] scaffold0101 (1 HSPs)
scaffold0101 (96-167)||(33162-33233)
[»] scaffold0794 (1 HSPs)
scaffold0794 (146-215)||(5579-5647)
[»] scaffold0494 (1 HSPs)
scaffold0494 (103-167)||(1234-1299)
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-50)||(16888-16937)
scaffold0341 (103-163)||(17000-17061)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 28610756 - 28610879
Alignment:
Q  93 ctactgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgat 192  Q
    ||||||||||||||||  ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||  |||||||||||||||     
T  28610756 ctactgccattttttcactgtgaaaatttttcacaaatattcctcggtaccttactaccgacgttttcctcggcagtaaactaccgacgttttctatgac 28610855  T
Q  193 agagttctacgtaaactgacgtaa 216  Q
    | ||||||||||||| ||||||||    
T  28610856 atagttctacgtaaattgacgtaa 28610879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 6505601 - 6505672
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  6505601 ctgccattttttcgttgtgaaattttttcacaagtattcctcggtaccttactaccaaggttttcctcggca 6505672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 36817149 - 36817220
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||    
T  36817149 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 36817220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 23442759 - 23442849
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttc 186  Q
    |||||||||||||| ||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||  | ||| |||||||||||    
T  23442759 ctgccattttttcgatgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggcactacactatcgacgttttc 23442849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 46992887 - 46992956
Alignment:
Q  99 ccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcag 168  Q
    ||||||||||||||||||| ||||||||||   ||||| || ||||||||||||||||||||||||||||    
T  46992887 ccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggcag 46992956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 14398980 - 14398913
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctc 163  Q
    |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||    
T  14398980 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctc 14398913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 29929822 - 29929764
Alignment:
Q  97 tgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgagg 155  Q
    ||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  29929822 tgccatttttttgttgtgaaaatttttcacaagtattcctcggtaccttactaccgagg 29929764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 29978976 - 29978918
Alignment:
Q  97 tgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgagg 155  Q
    ||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  29978976 tgccatttttttgttgtgaaaatttttcacaagtattcctcggtaccttactaccgagg 29978918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 7838038 - 7837971
Alignment:
Q  100 cattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||| ||||||||||   ||||| || |||||||||| ||||||||||||||||    
T  7838038 cattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactactgaggttttcctcggca 7837971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7842546 - 7842595
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  7842546 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 7842595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 7842647 - 7842711
Alignment:
Q  102 ttttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||| |||||   ||||| || |||||||||||||||||||||||||||    
T  7842647 ttttttcgttgtgaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcggca 7842711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28610686 - 28610735
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  28610686 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 28610735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 9429474 - 9429545
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| |||||||| || | ||||| ||||||| ||||||| ||||||||||||||    
T  9429474 ctgccattttttcgttgtgaaa-tttttcactaagagttcctcggtacctaactaccgtggttttcctcggca 9429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 16445044 - 16444973
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||| ||||||| || | ||||| || ||||| |||||||||||||||||||||    
T  16445044 ctgccattttttcgttgtgaaat-ttttcactaagacttcctcggcaccttgctaccgaggttttcctcggca 16444973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 48250502 - 48250566
Alignment:
Q  104 ttttcgttgtgaaa-ttttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||| |||||||||||   ||||| || |||||||||||||||||||||||||||    
T  48250502 ttttcgttgtgaaaattttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 48250566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6505488 - 6505537
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||||||||    
T  6505488 atatgaattaacaactaactaatgcataaacatcaatgtcataatgaatt 6505537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7838137 - 7838088
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||||||||    
T  7838137 atatgaattaacaactaactaatgcataaacatcaatgtcataatgaatt 7838088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14399086 - 14399037
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  14399086 atatgaattaacaactaactaatgtataaacatcaatgccataatgaatt 14399037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23442659 - 23442708
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  23442659 atatgaattaacaactaactaatgtataaacatcaatgccataatgaatt 23442708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29929920 - 29929871
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||| || |||||||||    
T  29929920 atatgaattaacaactaactaatgcataaacatcaatcccataatgaatt 29929871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29979074 - 29979025
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||| || |||||||||    
T  29979074 atatgaattaacaactaactaatgcataaacatcaatcccataatgaatt 29979025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46992777 - 46992826
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||| ||||    
T  46992777 atatgaattaacaactaactaatgcataaacatcaatgccataataaatt 46992826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48250397 - 48250446
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||  |||||||||    
T  48250397 atatgaattaacaactaactaatgcataaacatcaatgctataatgaatt 48250446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3949274 - 3949226
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  3949274 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 3949226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6741418 - 6741370
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  6741418 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 6741370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8160514 - 8160562
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  8160514 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 8160562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30947173 - 30947221
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  30947173 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 30947221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 8160622 - 8160693
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| ||||   ||||  ||||| |||||||  |||||||||||||||||||||    
T  8160622 ctgccattttttcgtggtgaaaattttcaccaaaagttcctcggtacctagctaccgaggttttcctcggca 8160693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9429363 - 9429412
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  9429363 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 9429412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 13747363 - 13747431
Alignment:
Q  99 ccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||| |||| ||| || | ||||| || |||| ||||||||||||||||||||||    
T  13747363 ccattttttcgttgtgaaaatttt-caccaagagttcctcggcacctaactaccgaggttttcctcggca 13747431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36817046 - 36817095
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  36817046 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 36817095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 46973625 - 46973504
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgatag- 194  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||  ||| |||||| |||| ||     
T  46973625 ctgccattttttcgttgtgaaaatttttcacaaatattcctcggtaccttactaccgaggttttcctcggcagtcaactaccgaggttttccatgacaga 46973526  T
Q  195 agttctacgtaaactgacgtaa 216  Q
    ||||||||||||||||||||||    
T  46973525 agttctacgtaaactgacgtaa 46973504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 36076215 - 36076331
Alignment:
Q  99 ccattttttcgttgtgaaatttt-ttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgatagagt 197  Q
    ||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||   || |||||| |||| |||||    
T  36076215 ccatttttttgttgtgaaatttttttcacaagtattcctcggtaccttactaccgaggttttcctcggcagtaaactactgaggttttccatgacagagt 36076314  T
Q  198 tctacgtaaactgacgta 215  Q
    ||||||| ||||||||||    
T  36076315 tctacgt-aactgacgta 36076331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 37015339 - 37015268
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||    
T  37015339 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 37015268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 50117402 - 50117472
Alignment:
Q  97 tgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||    
T  50117402 tgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 50117472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 22345707 - 22345634
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaa-tattccttggtaccttactaccgaggttttcctcggcag 168  Q
    ||||||||||||||||| |||| |||||||| || |||||||||||| |||||||||||||||||||| |||||    
T  22345707 ctgccattttttcgttgagaaaatttttcaccaagtattccttggtatcttactaccgaggttttccttggcag 22345634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 41454256 - 41454184
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||||||||||| || | ||||| || |||| ||||||||||||||||||||||    
T  41454256 ctgccattttttcgttgtgaaattttttcaccaagagttcctcggcacctaactaccgaggttttcctcggca 41454184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 13174233 - 13174174
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgagg 155  Q
    ||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  13174233 ctgccatttttccgttgtaaaaatttttcacaagtattccttggtaccttactaccgagg 13174174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 22398241 - 22398170
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   ||||| || ||||| |||||||||||||||||||||    
T  22398241 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttgctaccgaggttttcctcggca 22398170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 44466005 - 44465933
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||| ||| |||||||| || | ||||| || |||||||||||||||||||||||||||    
T  44466005 ctgccattttttcgttgtaaaaatttttcaccaagagttcctcggcaccttactaccgaggttttcctcggca 44465933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 7980821 - 7980880
Alignment:
Q  99 ccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttt 158  Q
    ||||||||||||||||||| |||||||||| |||||||  ||||||||||||||| ||||    
T  7980821 ccattttttcgttgtgaaaatttttcacaagtattcctcagtaccttactaccgaagttt 7980880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19498609 - 19498658
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  19498609 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 19498658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22345799 - 22345750
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  22345799 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 22345750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37015437 - 37015388
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  37015437 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 37015388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 50117293 - 50117342
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  50117293 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 50117342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 5078352 - 5078281
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||| ||||||| || | ||||| |||| || ||||||||||||||||||||||    
T  5078352 ctgccattttttcgttgtgaaat-ttttcaccaagagttcctcggtatctaactaccgaggttttcctcggca 5078281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 13629840 - 13629769
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||| ||||||| || | ||||| || ||||| |||||||||||||||||||||    
T  13629840 ctgccattttttcgttgtgaaat-ttttcactaagacttcctcggcaccttgctaccgaggttttcctcggca 13629769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 26466806 - 26466854
Alignment:
Q  2 tatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||||    
T  26466806 tatgaactaacaactaactaatgcataaacatcaattgcgtaatgaatt 26466854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7980722 - 7980771
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||| ||||    
T  7980722 atatgaattaacaactaactaatgcataaacatcaatgccataataaatt 7980771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 23914278 - 23914206
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaa--tattccttggtaccttactaccgaggttttcctcggc 166  Q
    |||||||||||||  | ||||||||||||||||   | ||||| || ||||||||||||||||||||||||||    
T  23914278 ctgccattttttccctatgaaattttttcacaagagttttcctcggcaccttactaccgaggttttcctcggc 23914206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 23914380 - 23914331
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  23914380 atatgaattaacaactaactaatgtataaacatcaatgccataatgaatt 23914331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 44620746 - 44620814
Alignment:
Q  99 ccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||| |||||||| || | ||||| || |||| ||||||||||||||||||||||    
T  44620746 ccattttttcgttgtgaaa-tttttcactaagagttcctcggcacctaactaccgaggttttcctcggca 44620814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3947992 - 3948040
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  3947992 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 3948040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3983642 - 3983594
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  3983642 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 3983594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20349987 - 20349939
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  20349987 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 20349939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 29356327 - 29356398
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| |||| ||| || | ||||| || |||| ||||||||||||||||||||||    
T  29356327 ctgccattttttcgttgtgaaaatttt-caccaagagttcctcggcacctaactaccgaggttttcctcggca 29356398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 161
Target Start/End: Complemental strand, 4516369 - 4516338
Alignment:
Q  130 tattccttggtaccttactaccgaggttttcc 161  Q
    ||||||||||||||||||||||||||||||||    
T  4516369 tattccttggtaccttactaccgaggttttcc 4516338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 22345630 - 22345561
Alignment:
Q  146 actaccgaggttttcctcggcagcaaactgtcgacgttttctatgatagagttctacgtaaactgacgtaa 216  Q
    |||||||| ||||||||||||||  |||||  || |||||| |||| |||||||||||| |||||||||||    
T  22345630 actaccgaagttttcctcggcagttaactgctgaagttttccatgacagagttctacgt-aactgacgtaa 22345561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 4516296 - 4516259
Alignment:
Q  215 aagccaaaaattgaacggattaaaatgatcaataccta 252  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  4516296 aagccaaaaaatgaacggattaaaatgctcaataccta 4516259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6561698 - 6561747
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||    
T  6561698 atatgaattaacaactaactaatgtataaacatcaatgccatgatgaatt 6561747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 6561810 - 6561871
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctc 163  Q
    |||||||||||||||  ||||||| || | ||||| || |||||||||||||||||||||||    
T  6561810 tttttcgttgtgaaaaattttcaccaagagttcctcggcaccttactaccgaggttttcctc 6561871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13174334 - 13174285
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| |||||||||||| || |||||||||    
T  13174334 atatgaattaacaactaactaatggataaacatcaataccataatgaatt 13174285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 21943898 - 21943935
Alignment:
Q  13 aactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||||||||||||||||||||||| | |||||||||    
T  21943898 aactaactaatgcataaacatcaatgtcataatgaatt 21943935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29356218 - 29356267
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  29356218 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 29356267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 36076114 - 36076151
Alignment:
Q  13 aactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  36076114 aactaactaatgcgtaaacatcaatgccataatgaatt 36076151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41454365 - 41454316
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  41454365 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 41454316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44466113 - 44466064
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  44466113 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 44466064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 46973701 - 46973664
Alignment:
Q  13 aactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  46973701 aactaactattgcataaacatcaatgccataatgaatt 46973664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 3948089 - 3948160
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  3948089 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 3948160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 3983533 - 3983462
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  3983533 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 3983462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 13174167 - 13174139
Alignment:
Q  188 atgatagagttctacgtaaactgacgtaa 216  Q
    |||||||||||||||||||||||||||||    
T  13174167 atgatagagttctacgtaaactgacgtaa 13174139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 16247278 - 16247326
Alignment:
Q  2 tatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||| ||| |||||||||||||||||||||||||  | |||||||||    
T  16247278 tatgaattaacaactaactaatgcataaacatcaatttcataatgaatt 16247326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 20349877 - 20349806
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  20349877 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 20349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 27569416 - 27569368
Alignment:
Q  2 tatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||| ||| |||||||||||||||||||||||||  | |||||||||    
T  27569416 tatgaattaacaactaactaatgcataaacatcaattgcataatgaatt 27569368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 38775656 - 38775692
Alignment:
Q  13 aactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  38775656 aactaagtaatgcataaacatcaatgccataatgaat 38775692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 38775753 - 38775824
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  38775753 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 38775824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 33993722 - 33993654
Alignment:
Q  100 cattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcag 168  Q
    ||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  33993722 cattttttcgttgtgaaattttttcacaagtattcctcagtaccttactaccgaggttttcctcggcag 33993654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 4203861 - 4203950
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaa-tattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttt 184  Q
    |||||||||||||||||||||| |||||||| || ||||| | |||||||||||||||||||||||||||||||  ||||||||| ||||    
T  4203861 ctgccattttttcgttgtgaaaatttttcaccaagtattcatcggtaccttactaccgaggttttcctcggcagttaactgtcgaggttt 4203950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 31098560 - 31098631
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||||||||||||||   ||||| ||||||| |||||||||| |||||||||||    
T  31098560 ctgccattttttcgttgtgaaattttttcacaagagttcctcggtacctaactaccgaggatttcctcggca 31098631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 7800641 - 7800758
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgataga 195  Q
    |||||||||||||||||||||| |||  |||||   ||||| || |||||||||||||||||||||||||||  | |||  ||| |||||||||||||||    
T  7800641 ctgccattttttcgttgtgaaaattt--cacaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaagttttctatgataga 7800738  T
Q  196 gttctacgtaaactgacgtaa 216  Q
    |||  |||| |||||||||||    
T  7800739 gtttgacgt-aactgacgtaa 7800758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 27867472 - 27867544
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| |||||||| || | ||||| || |||||||||||||||||||||||||||    
T  27867472 ctgccattttttcgttgtgaaaatttttcaccaagagttcctcggcaccttactaccgaggttttcctcggca 27867544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 34123547 - 34123618
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||| |||||| ||||||||||||||||||||   ||||| || |||||||||||||||||||||||||||    
T  34123547 ctgccgtttttttgttgtgaaattttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 34123618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 34078214 - 34078142
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||||||||||| || | ||||| |  |||||||||||||||||||||| ||||    
T  34078214 ctgccattttttcgttgtgaaattttttcaccaagagttcctcgacaccttactaccgaggttttccttggca 34078142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 1036178 - 1036245
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcct 162  Q
    |||||||||||||||||||||| |||||||| || | ||||| |||| ||||||||||||||||||||    
T  1036178 ctgccattttttcgttgtgaaaatttttcaccaagagttcctcggtatcttactaccgaggttttcct 1036245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 7021511 - 7021582
Alignment:
Q  97 tgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||||||||||| || | ||||| || |||| ||||| ||||||||||||||||    
T  7021511 tgccattttttcgttgtgaaattttttcaccaagagttcctcggcacctaactactgaggttttcctcggca 7021582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 11033089 - 11033160
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   || || || ||||| |||||||||||||||||||||    
T  11033089 ctgccattttttcgttgtgaaaatttttcacaagagtttctcggcaccttgctaccgaggttttcctcggca 11033160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 25896731 - 25896802
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||| ||||||| ||||||||||   ||||| |  |||||||||||||||||||||||||||    
T  25896731 ctgccattttttcgctgtgaaaatttttcacaagagttcctcgacaccttactaccgaggttttcctcggca 25896802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 38859828 - 38859899
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   ||||| |  ||||| |||||||||||||||||||||    
T  38859828 ctgccattttttcgttgtgaaaatttttcacaagagttcctcgacaccttgctaccgaggttttcctcggca 38859899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34123458 - 34123507
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  34123458 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 34123507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1036081 - 1036130
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  1036081 atatgaattaacaactaactaatgtataaacatcaatgccataatgaatt 1036130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30354034 - 30354083
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||| ||||||||||| |||||||||    
T  30354034 atatgaaataacaactaactaatgcatatacatcaatgccataatgaatt 30354083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33993799 - 33993750
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  33993799 atatgaattaacaactaactaatgcataaacatcaatgccaaaatgaatt 33993750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 37820508 - 37820579
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| ||||||| ||||||||||||||||||||||    
T  37820508 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctaactaccgaggttttcctcggca 37820579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 4203770 - 4203812
Alignment:
Q  8 ctaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||| ||||||||||||||||||||||||||||  ||||||||    
T  4203770 ctaacaactaactaatgcataaacatcaatgccacaatgaatt 4203812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7021408 - 7021457
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  7021408 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 7021457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7800539 - 7800576
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatg 38  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  7800539 atatgaattaacaactaactaatgcataaacatcaatg 7800576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 18537950 - 18537991
Alignment:
Q  95 actgccattttttcgttgtgaaattttttcacaaatattcct 136  Q
    ||||||||||||||||||||||| ||||| |||| |||||||    
T  18537950 actgccattttttcgttgtgaaaatttttgacaagtattcct 18537991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 24051117 - 24051154
Alignment:
Q  13 aactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||||||||||||||||||||||||  |||||||||    
T  24051117 aactaactaatgcataaacatcaatgcgataatgaatt 24051154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25896630 - 25896679
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  25896630 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 25896679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28885938 - 28885987
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  28885938 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 28885987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31098465 - 31098514
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||| || ||||||| |||||||||    
T  31098465 atatgaattaacaactaactaatgcataatcaacaatgccataatgaatt 31098514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34078310 - 34078261
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  34078310 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 34078261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 20285536 - 20285488
Alignment:
Q  2 tatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||| ||| |||||||||||||||||||||||||  | |||||||||    
T  20285536 tatgaattaacaactaactaatgcataaacatcaattgcataatgaatt 20285488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 21999593 - 21999545
Alignment:
Q  2 tatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||| ||| |||||||| |||| |||||||||||||| |||||||||    
T  21999593 tatgaattaacaactaactgatgcgtaaacatcaatgccataatgaatt 21999545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 28886046 - 28886117
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||||||| || | ||||| | |||||  |||||||||||||||||||||    
T  28886046 ctgccattttttcgtggtgaaa-tttttcaccaagagttcctcgatacctagctaccgaggttttcctcggca 28886117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37820409 - 37820457
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| ||||||||    
T  37820409 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaat 37820457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 43949898 - 43950006
Alignment:
Q  98 gccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgatagagt 197  Q
    |||||||||||||||||||| |||||||||| ||||||| |||| |||  |||||||||||||||||||||  ||||| ||| |||| | |||| |||||    
T  43949898 gccattttttcgttgtgaaaatttttcacaagtattcctcggtatcttgataccgaggttttcctcggcagttaactgccgaggtttcccatgacagagt 43949997  T
Q  198 tctacgtaa 206  Q
    |||||||||    
T  43949998 tctacgtaa 43950006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 41008579 - 41008689
Alignment:
Q  97 tgccattttttcgttgtgaaattttttcacaaa-tattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgataga 195  Q
    ||||||||||||||||||||| |||||||| || ||||||| |||||||||||| |||||||||||| |||||  ||||| ||| |||| | |||| |||    
T  41008579 tgccattttttcgttgtgaaaatttttcaccaagtattcctcggtaccttactatcgaggttttccttggcagttaactgccgaggtttcccatgacaga 41008678  T
Q  196 gttctacgtaa 206  Q
    |||||||||||    
T  41008679 gttctacgtaa 41008689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 9651625 - 9651548
Alignment:
Q  87 tggcagctactgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcg 164  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||    
T  9651625 tggcagttgctgccattttttcgttgtgaaattttttcacaagtatttctcggtacctaactaccgaggttttcctcg 9651548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 34921396 - 34921474
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaact 174  Q
    ||||| |||||| ||||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||    
T  34921396 ctgccgtttttttgttgtgaaaatttttcacaagtattcctcggtaccttactactgaggttttcctcggcagtaaact 34921474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 1100712 - 1100792
Alignment:
Q  87 tggcagctactgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||  |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||    
T  1100712 tggcagcagctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 1100792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 24750088 - 24750017
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||    
T  24750088 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 24750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 45475808 - 45475747
Alignment:
Q  97 tgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttt 158  Q
    ||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||||||    
T  45475808 tgccattttttcgttgtgaaaatttttcacaagtattcctcagtaccttactaccgaggttt 45475747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 27276002 - 27276073
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||| ||||    
T  27276002 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttccttggca 27276073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 39794410 - 39794340
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggc 166  Q
    |||||||||||||||||||||| ||||||||||   ||||| || ||||| ||||||||||||||||||||    
T  39794410 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttgctaccgaggttttcctcggc 39794340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 12908103 - 12908162
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgagg 155  Q
    |||| ||||||||||||||||| ||||||||||||||| || | ||||||||||||||||    
T  12908103 ctgctattttttcgttgtgaaaatttttcacaaatatttctcgataccttactaccgagg 12908162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9651723 - 9651674
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  9651723 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 9651674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 7263465 - 7263394
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||| ||||||| || | ||||| || ||||| |||||||||||||||||||||    
T  7263465 ctgccattttttcgttgtgaaat-ttttcaccaagagttcctcggcaccttgctaccgaggttttcctcggca 7263394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 435764 - 435653
Alignment:
Q  97 tgccattttttcgtt-gtgaaattttttcacaaa-tattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgatag 194  Q
    ||||||||||| ||| |||||| |||||||| || |||||||  | ||||||||| ||||||||||||||||||  |||||  || |||| | |||| ||    
T  435764 tgccatttttttgtttgtgaaaatttttcaccaagtattcctcagcaccttactatcgaggttttcctcggcagttaactgctgaggtttcccatgacag 435665  T
Q  195 agttctacgtaa 206  Q
    ||||||||||||    
T  435664 agttctacgtaa 435653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 19186847 - 19186926
Alignment:
Q  96 ctgccattttttcgttgtga-aattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaact 174  Q
    |||||||||||||| ||||| ||  ||||||||| |||| || ||||||| ||||||||| ||||||||||||| |||||    
T  19186847 ctgccattttttcggtgtgacaaaattttcacaagtatttctcggtacctaactaccgagcttttcctcggcagtaaact 19186926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 435864 - 435815
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  435864 atatgaattaacaactaactaatgcataaacatcaatgccacaatgaatt 435815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1100614 - 1100663
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||| ||||||||| |||||||||    
T  1100614 atatgaattaacaactaactaatgcataaagatcaatgccataatgaatt 1100663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 1149896 - 1149831
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcc 161  Q
    ||||||||||| |||||||||| ||||||||||   || || || |||||||||||||||||||||    
T  1149896 ctgccatttttacgttgtgaaaatttttcacaagagtttctcggcaccttactaccgaggttttcc 1149831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24605621 - 24605670
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||||||||    
T  24605621 atatgaattaacaactaactaatgcataaacatcaatgtcataatgaatt 24605670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27275892 - 27275941
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  27275892 atatgaattaacaactaactaatgtataaacatcaatgccataatgaatt 27275941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34921299 - 34921348
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||||||||    
T  34921299 atatgaattaacaactaactaatgcataaacatcaatgtcataatgaatt 34921348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41008490 - 41008539
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  41008490 atatgaattaacaactaactaatgcataaacatcaatgccacaatgaatt 41008539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 41182921 - 41182989
Alignment:
Q  146 actaccgaggttttcctcggcagcaaactgtcgacgttttctatgatagagttctacgtaaactgacgta 215  Q
    |||||||| ||||||||||||||  ||||||||| |||| | |||| |||||||||||| ||||||||||    
T  41182921 actaccgatgttttcctcggcagttaactgtcgaggtttcccatgacagagttctacgt-aactgacgta 41182989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45475915 - 45475866
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||| |||||||||| |||||||||    
T  45475915 atatgaattaacaactaactaatgcataagcatcaatgccataatgaatt 45475866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 212971 - 213019
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  212971 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 213019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5335415 - 5335367
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  5335415 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 5335367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10623984 - 10624032
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  10623984 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 10624032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 24607234 - 24607266
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaa 128  Q
    |||||||||||||||||||||||||||||||||    
T  24607234 ctgccattttttcgttgtgaaattttttcacaa 24607266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41560543 - 41560495
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  41560543 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 41560495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3803095 - 3803144
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||    
T  3803095 atatgaattaacaactaactaatgtataaacatcaatgccatgatgaatt 3803144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 3803200 - 3803265
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||| ||||  ||||||| || | ||||| || |||||||||||||||||||||||||||    
T  3803200 tttttcgttgagaaaaattttcaccaagagttcctcggcaccttactaccgaggttttcctcggca 3803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7263563 - 7263514
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  7263563 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 7263514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 213079 - 213150
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  213079 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 213150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 5335307 - 5335236
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  5335307 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 5335236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 10624092 - 10624163
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  10624092 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 10624163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 38946183 - 38946112
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  38946183 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 38946112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38946294 - 38946250
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaat 45  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  38946294 atatgaattaacaactaagtaatgcataaacatcaatgccataat 38946250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 41560433 - 41560362
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  41560433 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 41560362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 43370201 - 43370091
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgataga 195  Q
    |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||  | |||  ||| |||||| |||| |||    
T  43370201 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaagttttccatgacaga 43370102  T
Q  196 gttctacgtaa 206  Q
    |||||||||||    
T  43370101 gttctacgtaa 43370091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 2146598 - 2146670
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaa-tattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| |||||||| || ||||||| |||||||||||||| |||||||||||||||    
T  2146598 ctgccattttttcgttgtgaaaatttttcaccaagtattcctcggtaccttactaccaaggttttcctcggca 2146670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 35966376 - 35966445
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcgg 165  Q
    |||||||||||||||||||||| ||||||||||   ||||| || |||||||||||||||||||||||||    
T  35966376 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcgg 35966445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 20547216 - 20547145
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||| |||||||| ||||||||||   ||||| || |||||||||||||||||||||||||||    
T  20547216 ctgccattttttccttgtgaaaatttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 20547145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39752556 - 39752605
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39752556 atatgaattaacaactaactaatgcataaacatcaatgccgtaatgaatt 39752605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 7168349 - 7168286
Alignment:
Q  96 ctgccattttttcgttgtgaaa-ttttttcacaaatattccttggtaccttactaccgaggttt 158  Q
    |||||||||||||||||||||| ||||||||||| | || || |||||||||||||||||||||    
T  7168349 ctgccattttttcgttgtgaaaattttttcacaagtttttctcggtaccttactaccgaggttt 7168286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 43689780 - 43689831
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttac 147  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  43689780 ctgccattttttcgttgtgaaaatttttcacaagtattcctcggtaccttac 43689831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2146514 - 2146563
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  2146514 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 2146563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4866989 - 4866940
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  4866989 atatgaaataacaactaactaatgcataaacatcaatgccataatgaatt 4866940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7168438 - 7168389
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  7168438 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 7168389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43689679 - 43689728
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  43689679 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 43689728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 1115190 - 1115119
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||| ||||||||||||||||||| ||| || | ||||| ||||||| ||||||||||||||||||||||    
T  1115190 ctgccatattttcgttgtgaaattttt-caccaagagttcctcggtacctaactaccgaggttttcctcggca 1115119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 45454813 - 45454749
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttc 160  Q
    |||||||||||||||||||||| ||||||||||   ||||| || ||||||||||||| ||||||    
T  45454813 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttactaccgaagttttc 45454749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 39752650 - 39752721
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaa-ta-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||| ||||| |||||||| || || ||||  ||||||||||||||||||||||||||||||    
T  39752650 ctgccattttttcgttatgaaaatttttcaccaagtacttcc--ggtaccttactaccgaggttttcctcggca 39752721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35966278 - 35966327
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||| || |||||||||    
T  35966278 atatgaattaacaactaactaatgcataaacatcaataccataatgaatt 35966327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43370296 - 43370247
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||| |||||||||||||||| |||||||||    
T  43370296 atatgaattaacaactaactaatacataaacatcaatgccataatgaatt 43370247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7340610 - 7340562
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  7340610 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 7340562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30305140 - 30305188
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  30305140 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 30305188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32432395 - 32432443
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  32432395 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 32432443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1115303 - 1115254
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  1115303 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 1115254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 8423460 - 8423531
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  8423460 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 8423531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 18206158 - 18206087
Alignment:
Q  143 cttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgatagagttctacgtaaactgacgta 215  Q
    |||||||||||||||||||||| ||| || ||  ||| |||| | |||| |||||||||||| ||||||||||    
T  18206158 cttactaccgaggttttcctcgacagtaagctaccgaggtttcccatgacagagttctacgt-aactgacgta 18206087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 22577995 - 22577967
Alignment:
Q  188 atgatagagttctacgtaaactgacgtaa 216  Q
    |||||||||||||||||||||||||||||    
T  22577995 atgatagagttctacgtaaactgacgtaa 22577967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 22657625 - 22657577
Alignment:
Q  2 tatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||| ||| |||||||||||||||||||||||||  | |||||||||    
T  22657625 tatgaattaacaactaactaatgcataaacatcaattacataatgaatt 22657577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32378438 - 32378486
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||  ||||||||    
T  32378438 atatgaattaacaactaagtaatgcataaacatcaatgctataatgaat 32378486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 32378548 - 32378619
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  32378548 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 32378619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 32432503 - 32432574
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  32432503 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 32432574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 18606458 - 18606380
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaact 174  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||| |||||    
T  18606458 ctgccattttttcgttgtgaaaatttttcacaagtattcctcggtaccttactttcgaggttttcctcggcagtaaact 18606380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 28250325 - 28250254
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||||||||||||||   ||||| || |||||||||||||||||||||||||||    
T  28250325 ctgccattttttcgttgtgaaattttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 28250254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 7362968 - 7363086
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgataga 195  Q
    |||||||||||||||||||||| ||||| ||||   |||||  | ||||||| ||||||||||||||||||||  ||| | ||| |||| | |||| |||    
T  7362968 ctgccattttttcgttgtgaaaatttttaacaagagttcctccgcaccttacaaccgaggttttcctcggcagttaacagccgaggtttcccatgacaga 7363067  T
Q  196 gttctacgtaaactgacgta 215  Q
    ||||||||| ||||||||||    
T  7363068 gttctacgt-aactgacgta 7363086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 13388336 - 13388408
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| ||||||||||||||| || | ||||| || |||| ||||||||||||||||||||||    
T  13388336 ctgccattttttcgtagtgaaattttttcactaagagttcctcggcacctaactaccgaggttttcctcggca 13388408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 31146822 - 31146744
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaact 174  Q
    |||||||||||||||||||| | ||||||||||   ||||| || |||||||||||  |||||||||||||| ||||||    
T  31146822 ctgccattttttcgttgtgataatttttcacaagagttcctcggcaccttactaccttggttttcctcggcaccaaact 31146744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24219771 - 24219722
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  24219771 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 24219722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 2052258 - 2052318
Alignment:
Q  100 cattttttcgttgtgaaattttttca-caaatattccttggtaccttactaccgaggtttt 159  Q
    |||||||||||||||||| ||||||| ||| ||||||| | ||||||||||||||||||||    
T  2052258 cattttttcgttgtgaaaatttttcaccaagtattcctcgataccttactaccgaggtttt 2052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 7361602 - 7361538
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||||||   ||| | || ||||||| |||||||||||||||||||    
T  7361602 tttttcgttgtgaaattttttcacaagagttcatcggcaccttacaaccgaggttttcctcggca 7361538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 18347462 - 18347391
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| ||||||||||| ||| || | ||||| ||||||| ||||||||||||||||||||||    
T  18347462 ctgccattttttcgtggtgaaattttt-caccaagagttcctcggtacctaactaccgaggttttcctcggca 18347391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7362875 - 7362924
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  7362875 atatgaattaacaactaactaatgcataaacatcaatgccacaatgaatt 7362924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 18606548 - 18606499
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||| ||| |||||||||    
T  18606548 atatgaattaacaactaactaatgcataaacatcaacgccataatgaatt 18606499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26702318 - 26702269
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||||||||    
T  26702318 atatgaattaacaactaactaatgcataaacatcaatgtcataatgaatt 26702269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 31146901 - 31146864
Alignment:
Q  13 aactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    |||||||||||||||||||||||||||| |||||||||    
T  31146901 aactaactaatgcataaacatcaatgccataatgaatt 31146864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1612280 - 1612328
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  1612280 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 1612328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 7363103 - 7363175
Alignment:
Q  218 ccaaaaattgaacggattaaaatgatcaatacctannnnnnnacgtc-aaagtgtgttgatacctcctatgct 289  Q
    ||||||| | |||||||||||||| ||||||||||       ||||| |||||||||||||||||||||||||    
T  7363103 ccaaaaaataaacggattaaaatgctcaatacctatttttttacgtcaaaagtgtgttgatacctcctatgct 7363175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28250427 - 28250378
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  28250427 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 28250378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 1612389 - 1612460
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  1612389 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 1612460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 26702239 - 26702207
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaa 128  Q
    |||||||||||||||||||||| ||||||||||    
T  26702239 ctgccattttttcgttgtgaaaatttttcacaa 26702207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 50487 - 50416
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||||||||||||||   ||||| || |||||||||||||||||||||||||||    
T  50487 ctgccattttttcgttgtgaaattttttcacaagagttcctcggcaccttactaccgaggttttcctcggca 50416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50589 - 50540
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  50589 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 50540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 38464403 - 38464466
Alignment:
Q  105 tttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcag 168  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  38464403 tttcgttgtgaaaatttttcacaagtattcctcggtaccttactaccgaggttttcctcggcag 38464466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 51644124 - 51644202
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaact 174  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||||| || ||||||||| |||||||| |||||    
T  51644124 ctgccattttttcgttgtgaaattttttcacaagtattcatcggtaccttaatatcgaggtttttctcggcagtaaact 51644202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 11494984 - 11494920
Alignment:
Q  104 ttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcag 168  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  11494984 ttttcgttgtgaaaatttttcacaagtattcctcggtaccttactacagaggttttcctcggcag 11494920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 11495062 - 11494998
Alignment:
Q  104 ttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcag 168  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  11495062 ttttcgtagtgaaaatttttcacaagtattcctcggtaccttactaccgaggttttcctcggcag 11494998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 44049545 - 44049474
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||| ||| ||||||||||   ||||| ||||||||||||||||||||||||||||||    
T  44049545 ctgccattttttcgttgtcaaaatttttcacaagagttcctcggtaccttactaccgaggttttcctcggca 44049474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 4769061 - 4768999
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttt 158  Q
    ||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||||    
T  4769061 ctgccattttttcgttgcgaaaatttttcacaagtattcctcggtaccttactaccgaggttt 4768999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 13173679 - 13173608
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||||||| ||||||||||   ||||| || ||||| |||||||||||||||||||||    
T  13173679 ctgccattttttcgttgtgaaaatttttcacaagagttcctcggcaccttgctaccgaggttttcctcggca 13173608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 18580955 - 18581034
Alignment:
Q  96 ctgccattttttcgttgtgaaatttttt-cacaaatattccttggtaccttactaccgaggttttcctcggcagcaaact 174  Q
    ||||||||||| |  ||||||||||||| ||||  ||||||| ||||||||||||||||||||||||| ||||| |||||    
T  18580955 ctgccatttttcctgtgtgaaatttttttcacaggtattcctcggtaccttactaccgaggttttccttggcagtaaact 18581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4769168 - 4769119
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  4769168 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 4769119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18580857 - 18580906
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  18580857 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 18580906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38464312 - 38464361
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  38464312 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44049650 - 44049601
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  44049650 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 44049601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51644016 - 51644065
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  51644016 atatgaattaacaactaactaatgcataaacatcaatgtcgtaatgaatt 51644065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 4979556 - 4979623
Alignment:
Q  100 cattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||||| ||||||||||   |||||  | |||||||||| ||||||||||||||||    
T  4979556 cattttttcgttgtgaaaatttttcacaagagttcctcagcaccttactactgaggttttcctcggca 4979623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4976287 - 4976238
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||||||||    
T  4976287 atatgaattaacaactaactaatgcataaacatcaatgtcataatgaatt 4976238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4979466 - 4979515
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  4979466 atatgaattaacaactaactaatgcataaacatcaatgccagaatgaatt 4979515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 19073286 - 19073351
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||  ||||||| || | ||||| || |||||||||||||||||||||||||||    
T  19073286 tttttcgttgtgaaaaattttcactaagagttcctcggcaccttactaccgaggttttcctcggca 19073351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 21471343 - 21471294
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| |||  ||||||||||||||||||||||||||| |||||||||    
T  21471343 atatgaattaaccactaactaatgcataaacatcaatgccataatgaatt 21471294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49565994 - 49566042
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  49565994 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 49566042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3404342 - 3404293
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  3404342 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 3404293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 9890438 - 9890373
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||   |||||| || | ||||| || |||||||||||||||||||||||||||    
T  9890438 tttttcgttgtgaaaaaatttcaccaagagttcctcggcaccttactaccgaggttttcctcggca 9890373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9890553 - 9890504
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||    
T  9890553 atatgaattaacaactaactaatgtataaacatcaatgccatgatgaatt 9890504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11495163 - 11495114
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||| |||||||||||||| | |||||||||    
T  11495163 atatgaattaacaactaactaatacataaacatcaatgtcataatgaatt 11495114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17140119 - 17140070
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||||||||||||||||| | |||||||||    
T  17140119 atatgaattaacaactaaataatgcataaacatcaatgacataatgaatt 17140070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19073189 - 19073238
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||    
T  19073189 atatgaattaacaactaactaatgtataaacatcaatgccatgatgaatt 19073238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41023903 - 41023854
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||    
T  41023903 atatgaattaacaactaactaatgtataaacatcaatgccatgatgaatt 41023854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 3404246 - 3404175
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| ||||||||||| |||  | | ||||| ||||||| ||||| ||||||||||||||||    
T  3404246 ctgccattttttcgtggtgaaattttt-caccgagagttcctcggtacctaactactgaggttttcctcggca 3404175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 49566102 - 49566173
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  49566102 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 49566173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 6976 - 7040
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttc 160  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||    
T  6976 ctgccattttttcgttgtgaaaatttttcacaagtattcctcggtaccttactacagaggttttc 7040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 11368 - 11447
Alignment:
Q  96 ctgccattttttcgttgtgaaa-ttttttcacaaatattccttggtaccttactaccgaggttttcctcggcagcaaact 174  Q
    |||||||||||||| ||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||| || |||||    
T  11368 ctgccattttttcggtgtgaaaattttttcacaagtattcttcggtaccttactaccgaggttttcctcggaagtaaact 11447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 808 - 878
Alignment:
Q  97 tgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||||||   ||| ||||||| ||||||||||||| ||||||||||||||||    
T  808 tgccattttttcgttgtgaaatttttcaccaagtattcctcggtaccttactactgaggttttcctcggca 878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 701 - 750
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| ||||||||||| |||||||||||||||| | |||||||    
T  701 atatgaattaacaactaactaatacataaacatcaatgccatgatgaatt 750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 47061330 - 47061268
Alignment:
Q  106 ttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggcag 168  Q
    |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  47061330 ttcgttgtgaaaatttttcacaagtattcctcggtaccttgctaccgaggttttcctcggcag 47061268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 42499829 - 42499758
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||||||| ||| || | ||||| || |||||||||||||||||||||||||||    
T  42499829 ctgccattttttcgttgtgaaattttt-caccaagagttcctcggcaccttactaccgaggttttcctcggca 42499758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19046799 - 19046848
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  19046799 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 19046848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 19046893 - 19046950
Alignment:
Q  95 actgccattttttcgttgtgaaattttttca-caaatattccttggtaccttactacc 151  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||    
T  19046893 actgccattttttcgttgtgaaaatttttcaccaagtattcctcggtaccttactacc 19046950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36186219 - 36186170
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  36186219 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 36186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47061433 - 47061384
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  47061433 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 47061384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30787069 - 30787020
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||||||||||||||||||| |||||||||    
T  30787069 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaatt 30787020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 18105820 - 18105749
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| ||||||||||| ||| || | ||||| ||||||  ||||||||||||||||||||||    
T  18105820 ctgccattttttcgtggtgaaattttt-caccaagagttcctcggtaccaaactaccgaggttttcctcggca 18105749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43623665 - 43623713
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  43623665 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 43623713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 45763800 - 45763682
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggcagcaaactgtcgacgttttctatgatag 194  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  ||||||||||||||||||||||  ||||| ||| | || | |||| ||    
T  45763800 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggcagttaactgccgaggattcccatgacag 45763702  T
Q  195 agttctacgtaaactgacgta 215  Q
     ||||||||| ||||||||||    
T  45763701 ggttctacgt-aactgacgta 45763682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45763909 - 45763861
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  45763909 atatgaattaacaactaagtaatgcataaacatcaatgccataatgaat 45763861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 36186106 - 36186063
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaatattccttggtacctta 146  Q
    ||||||||||||||||||||||| || ||||||| |||||||||    
T  36186106 tttttcgttgtgaaattttttcataagtattcctcggtacctta 36186063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 15060045 - 15059980
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||   |||||| || | ||||| || |||||||||||||||||||||||||||    
T  15060045 tttttcgttgtgaaaaaatttcaccaagagttcctcggcaccttactaccgaggttttcctcggca 15059980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15060145 - 15060096
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||    
T  15060145 atatgaattaacaactaactaatgtataaacatcaatgccatgatgaatt 15060096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 18105918 - 18105869
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  18105918 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 18105869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42499939 - 42499890
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| |||||||||    
T  42499939 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaatt 42499890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 618280 - 618328
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaat 49  Q
    ||||||| ||| |||||| ||||| ||||||||||||||| ||||||||    
T  618280 atatgaattaacaactaagtaatgtataaacatcaatgccataatgaat 618328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 30786961 - 30786890
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  30786961 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 30786890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 43623773 - 43623844
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||| |||||| |||| ||| || | ||||| |||||||  |||||||||||||||||||||    
T  43623773 ctgccattttttcgtggtgaaaatttt-caccaagagttcctcggtacctagctaccgaggttttcctcggca 43623844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 16124 - 16052
Alignment:
Q  95 actgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||| ||||||||||   ||| | || |||||||||||||||| ||||||||||    
T  16124 actgccattttttcgttgtgaaaatttttcacaagagttcttcggcaccttactaccgaggtattcctcggca 16052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16228 - 16179
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  16228 atatgaattaacaactaactaatgcataaacatcaatgccataatgaatt 16179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 11710 - 11639
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||| || ||||||||||   ||| | || |||||||||||||||||||||||||||    
T  11710 ctgccattttttcgttgtgcaaatttttcacaagagttcatcggcaccttactaccgaggttttcctcggca 11639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 22870 - 22941
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaatattccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||| ||||||||||||  |||||||||| |||||||  |||||||| |||||||||||||| |||||    
T  22870 ctgccattatttcgttgtgaatatttttcacaagtattcctcagtaccttaataccgaggttttccgcggca 22941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 22764 - 22813
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| | |||||||||||||||||||||||||| |||||||||    
T  22764 atatgaattaacacctaactaatgcataaacatcaatgccataatgaatt 22813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 33233 - 33162
Alignment:
Q  96 ctgccattttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    ||||||||||||||||||||||| ||||||| || | ||||| || ||||| |||||||||||||||||||||    
T  33233 ctgccattttttcgttgtgaaat-ttttcactaagagttcctcggcaccttgctaccgaggttttcctcggca 33162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 5647 - 5579
Alignment:
Q  146 actaccgaggttttcctcggcagcaaactgtcgacgttttctatgatagagttctacgtaaactgacgta 215  Q
    |||||||| ||||||||||||||  ||||||||| |||| | |||| |||||||||||| ||||||||||    
T  5647 actaccgatgttttcctcggcagttaactgtcgaggtttcccatgacagagttctacgt-aactgacgta 5579  T

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Target: scaffold0494 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 1299 - 1234
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctcggca 167  Q
    |||||||||||||||  ||||||| || | ||||| || |||||||||||||||||||||||||||    
T  1299 tttttcgttgtgaaaaattttcaccaagagttcctcggcaccttactaccgaggttttcctcggca 1234  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16888 - 16937
Alignment:
Q  1 atatgaactaataactaactaatgcataaacatcaatgccgtaatgaatt 50  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||    
T  16888 atatgaattaacaactaactaatgtataaacatcaatgccatgatgaatt 16937  T

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Target: scaffold0341; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 17000 - 17061
Alignment:
Q  103 tttttcgttgtgaaattttttcacaaata-ttccttggtaccttactaccgaggttttcctc 163  Q
    |||||||||||||||  ||||||| || | ||||| || |||||||||||||||||||||||    
T  17000 tttttcgttgtgaaaaattttcaccaagagttcctcggcaccttactaccgaggttttcctc 17061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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